[English] 日本語
![](img/lk-miru.gif)
- PDB-1ypa: DIRECT OBSERVATION OF BETTER HYDRATION AT THE N-TERMINUS OF AN AL... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1ypa | ||||||
---|---|---|---|---|---|---|---|
Title | DIRECT OBSERVATION OF BETTER HYDRATION AT THE N-TERMINUS OF AN ALPHA-HELIX WITH GLYCINE RATHER THAN ALANINE AS N-CAP | ||||||
![]() | CHYMOTRYPSIN INHIBITOR 2 | ||||||
![]() | PROTEINASE INHIBITOR(CHYMOTRYPSIN) | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Harpaz, Y. / Elmasry, N. / Fersht, A.R. / Henrick, K. | ||||||
![]() | ![]() Title: Direct observation of better hydration at the N terminus of an alpha-helix with glycine rather than alanine as the N-cap residue. Authors: Harpaz, Y. / Elmasry, N. / Fersht, A.R. / Henrick, K. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 23.7 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 14.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 356.9 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 356.9 KB | Display | |
Data in XML | ![]() | 2.4 KB | Display | |
Data in CIF | ![]() | 3.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 7181.550 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
---|---|
#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 1.92 Å3/Da / Density % sol: 35.99 % |
---|---|
Crystal grow | *PLUS Method: vapor diffusion, hanging drop |
-Data collection
Reflection | *PLUS Highest resolution: 2 Å / Lowest resolution: 14.5 Å / Num. obs: 3689 / % possible obs: 93 % / Num. measured all: 14561 / Rmerge(I) obs: 0.077 |
---|---|
Reflection shell | *PLUS % possible obs: 96.4 % / Rmerge(I) obs: 0.129 |
-
Processing
Software | Name: PROLSQ / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Rfactor obs: 0.178 / Highest resolution: 2 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2 Å
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Software | *PLUS Name: PROLSQ / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 2 Å / Rfactor obs: 0.178 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 11.6 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: p_angle_d / Dev ideal: 0.033 |