- PDB-1xxh: ATPgS Bound E. Coli Clamp Loader Complex -
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Basic information
Entry
Database: PDB / ID: 1xxh
Title
ATPgS Bound E. Coli Clamp Loader Complex
Components
(DNA polymerase III, delta ...) x 2
DNA polymerase III subunit gamma
Keywords
TRANSFERASE / AAA+ ATPase clamp loader / gamma complex / DNA Polymerase III / DNA replication
Function / homology
Function and homology information
DNA polymerase III, clamp loader complex / DNA clamp loader activity / DNA polymerase III complex / replisome / DNA polymerase processivity factor activity / 3'-5' exonuclease activity / ribonucleoside triphosphate phosphatase activity / DNA-templated DNA replication / DNA replication / DNA-directed DNA polymerase ...DNA polymerase III, clamp loader complex / DNA clamp loader activity / DNA polymerase III complex / replisome / DNA polymerase processivity factor activity / 3'-5' exonuclease activity / ribonucleoside triphosphate phosphatase activity / DNA-templated DNA replication / DNA replication / DNA-directed DNA polymerase / DNA-directed DNA polymerase activity / DNA repair / ATP hydrolysis activity / DNA binding / ATP binding / identical protein binding Similarity search - Function
Zinc Finger, Delta Prime; domain 3 - #10 / Zinc Finger, Delta Prime; domain 3 / DNA polymerase III, delta prime subunit / DNA polymerase III, delta subunit, C-terminal / : / DNA polymerase III, delta subunit, C terminal / DNA polymerase III subunit delta', AAA+ ATPase lid domain / DNA polymerase III subunit delta, C-terminal / Processivity clamp loader gamma complex DNA pol III C-term / DNA polymerase III, delta subunit ...Zinc Finger, Delta Prime; domain 3 - #10 / Zinc Finger, Delta Prime; domain 3 / DNA polymerase III, delta prime subunit / DNA polymerase III, delta subunit, C-terminal / : / DNA polymerase III, delta subunit, C terminal / DNA polymerase III subunit delta', AAA+ ATPase lid domain / DNA polymerase III subunit delta, C-terminal / Processivity clamp loader gamma complex DNA pol III C-term / DNA polymerase III, delta subunit / DNA polymerase III delta, N-terminal / DNA polymerase III, delta subunit / DNA polymerase III, tau subunit, domain V / DNA polymerase III subunit tau, DnaB-binding domain IV / DNA polymerase III, tau subunit, domain V superfamily / DNA polymerase III, subunit gamma/tau, helical lid domain / DNA polymerase III subunits tau domain IV DnaB-binding / DNA polymerase III tau subunit V interacting with alpha / DNA polymerase III, subunit gamma/ tau, N-terminal / DNA polymerase III, gamma subunit, domain III / DNA polymerase III subunits gamma and tau domain III / DNA polymerase III, delta subunit / DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal / Ubiquitin-associated (UBA) domain / Helicase, Ruva Protein; domain 3 - #60 / ClpA/B family / Helicase, Ruva Protein; domain 3 / P-loop containing nucleotide triphosphate hydrolases / ATPases associated with a variety of cellular activities / AAA+ ATPase domain / Up-down Bundle / Rossmann fold / P-loop containing nucleoside triphosphate hydrolase / Orthogonal Bundle / 3-Layer(aba) Sandwich / Mainly Alpha / Alpha Beta Similarity search - Domain/homology
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER / PHOSPHATE ION / DNA polymerase III subunit tau / DNA polymerase III subunit delta / DNA polymerase III subunit delta' Similarity search - Component
Biological species
Escherichia coli (E. coli)
Method
X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 3.45 Å
A: DNA polymerase III, delta subunit B: DNA polymerase III subunit gamma C: DNA polymerase III subunit gamma D: DNA polymerase III subunit gamma E: DNA polymerase III, delta prime subunit F: DNA polymerase III, delta subunit G: DNA polymerase III subunit gamma H: DNA polymerase III subunit gamma I: DNA polymerase III subunit gamma J: DNA polymerase III, delta prime subunit hetero molecules
A: DNA polymerase III, delta subunit B: DNA polymerase III subunit gamma C: DNA polymerase III subunit gamma D: DNA polymerase III subunit gamma E: DNA polymerase III, delta prime subunit hetero molecules
F: DNA polymerase III, delta subunit G: DNA polymerase III subunit gamma H: DNA polymerase III subunit gamma I: DNA polymerase III subunit gamma J: DNA polymerase III, delta prime subunit hetero molecules
There are 2 clamp loader complexes in the asymmetric unit. One consists of chains A-E and the second consists of chains F-J
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Components
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DNA polymerase III, delta ... , 2 types, 4 molecules AFEJ
#1: Protein
DNApolymeraseIII, deltasubunit
Mass: 38980.047 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Gene: holA / Production host: Escherichia coli (E. coli) / References: UniProt: P28630, DNA-directed DNA polymerase
#3: Protein
DNApolymeraseIII, deltaprimesubunit
Mass: 37261.855 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Gene: holB / Production host: Escherichia coli (E. coli) / References: UniProt: P28631, DNA-directed DNA polymerase
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Protein , 1 types, 6 molecules BCDGHI
#2: Protein
DNApolymeraseIIIsubunitgamma
Mass: 41510.855 Da / Num. of mol.: 6 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Gene: dnaX, dnaZ, dnaZX / Production host: Escherichia coli (E. coli) / References: UniProt: P06710, DNA-directed DNA polymerase
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