: / Pathogenesis-related protein Bet v I family / Bet v I type allergen / Bet v I/Major latex protein / Pathogenesis-related protein Bet v 1 family / START domain / Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 / START-like domain superfamily / 2-Layer Sandwich / Alpha Beta 類似検索 - ドメイン・相同性
Uncharacterized protein At1g24000 / MLP-like protein 423 類似検索 - 構成要素
BIOMOLECULE: THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). ...BIOMOLECULE: THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). THE AUTHORS ARE UNCERTAIN OF THE BIOLOGICAL UNIT.
解像度: 2.1→21.93 Å / Cor.coef. Fo:Fc: 0.939 / Cor.coef. Fo:Fc free: 0.912 / SU B: 4.033 / SU ML: 0.114 / SU R Cruickshank DPI: 0.234 / 交差検証法: THROUGHOUT / ESU R Free: 0.195
Rfactor
反射数
%反射
Selection details
Rfree
0.2392
733
5.031 %
RANDOM
Rwork
0.1857
-
-
-
all
0.188
-
-
-
obs
-
13837
99.4 %
-
溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.4 Å / 溶媒モデル: BABINET MODEL PLUS MASK
原子変位パラメータ
Biso mean: 24.432 Å2
Baniso -1
Baniso -2
Baniso -3
1-
-0.414 Å2
0 Å2
0.322 Å2
2-
-
1.182 Å2
0 Å2
3-
-
-
-0.768 Å2
精密化ステップ
サイクル: LAST / 解像度: 2.1→21.93 Å
タンパク質
核酸
リガンド
溶媒
全体
原子数
1909
0
0
106
2015
拘束条件
Refine-ID
タイプ
Dev ideal
Dev ideal target
数
X-RAY DIFFRACTION
r_bond_refined_d
0.018
0.022
1951
X-RAY DIFFRACTION
r_angle_refined_deg
1.513
1.946
2624
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
6.77
5
238
X-RAY DIFFRACTION
r_chiral_restr
0.112
0.2
295
X-RAY DIFFRACTION
r_gen_planes_refined
0.007
0.02
1418
X-RAY DIFFRACTION
r_nbd_refined
0.204
0.2
788
X-RAY DIFFRACTION
r_nbtor_refined
0.305
0.2
1341
X-RAY DIFFRACTION
r_xyhbond_nbd_refined
0.175
0.2
108
X-RAY DIFFRACTION
r_symmetry_vdw_refined
0.185
0.2
66
X-RAY DIFFRACTION
r_symmetry_hbond_refined
0.156
0.2
18
X-RAY DIFFRACTION
r_mcbond_it
1.133
1.5
1193
X-RAY DIFFRACTION
r_mcangle_it
2.033
2
1943
X-RAY DIFFRACTION
r_scbond_it
3.297
3
758
X-RAY DIFFRACTION
r_scangle_it
5.296
4.5
681
LS精密化 シェル
Refine-ID: X-RAY DIFFRACTION / Total num. of bins used: 19