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- PDB-1v1p: The structure SSL from Staphylococcus Aureus from an orthorhombic... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1v1p | ||||||
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Title | The structure SSL from Staphylococcus Aureus from an orthorhombic crystal form | ||||||
![]() | (Exotoxin 1) x 2 | ||||||
![]() | VIRULENCE FACTOR / ANTIGEN PRESENTING CELL / SECRETED PROTEIN / STAPHYLOCOCCAL EXOTOXIN 1 / SET1 / SUPERANTIGEN / OB-FOLD / {BETA}-GRASP | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Briggs, D.C. / Naylor, C.E. | ||||||
![]() | ![]() Title: Structural Relationships and Cellular Tropism of Staphylococcal Superantigen-Like Proteins Authors: Al-Shangiti, A. / Naylor, C.E. / Nair, S. / Briggs, D.C. / Henderson, B. / Chain, B. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 88 KB | Display | ![]() |
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PDB format | ![]() | 66.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 438.8 KB | Display | ![]() |
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Full document | ![]() | 448.9 KB | Display | |
Data in XML | ![]() | 15.9 KB | Display | |
Data in CIF | ![]() | 21.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1v1oC ![]() 1m4vS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.999932, -0.011239, 0.003138), Vector: Details | THE ABOVE OLIGOMERIC STATE WAS DETERMINED FROM THEDEPOSITED COORDINATES USING THE PROTEIN QUATERNARYSTRUCTURE (PQS) ALGORITHM. HOWEVER, THE AUTHORS OF THISPDB ENTRY STRESS THAT THE BIOLOGICALLY SIGNIFICANT STATEFOR THIS ENTRY IS UNKNOWN AT THE TIME OF DEPOSITION. | |
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Components
#1: Protein | Mass: 24234.094 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Protein | Mass: 24478.357 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
#3: Water | ChemComp-HOH / |
Sequence details | SIGNAL SEQUENCE REMOVED, HIS-TAG ADDED |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2 Å3/Da / Density % sol: 65.2 % |
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Crystal grow | pH: 8.5 Details: 0.1M TRICINE BUFFER @PH 8.5, 28% (W/V) PEG2K, 0.1M LITHIUM SULPHATE |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC CCD / Detector: CCD / Date: Aug 15, 2004 / Details: GE(220) AND A MULTILAYER |
Radiation | Monochromator: DIAMOND(111),GE(220) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.934 Å / Relative weight: 1 |
Reflection | Resolution: 2.7→31.01 Å / Num. obs: 11074 / % possible obs: 99.9 % / Redundancy: 4.5 % / Biso Wilson estimate: 55.92213 Å2 / Rmerge(I) obs: 0.14 / Net I/σ(I): 4.5902 |
Reflection shell | Resolution: 2.7→2.85 Å / Redundancy: 3.9 % / Rmerge(I) obs: 0.49 / Mean I/σ(I) obs: 1.53 / % possible all: 99.9 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1M4V Resolution: 2.7→58.722 Å / SU B: 17.44 / SU ML: 0.347 / Cross valid method: THROUGHOUT / ESU R Free: 0.447
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Displacement parameters | Biso mean: 39.808 Å2
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Refinement step | Cycle: LAST / Resolution: 2.7→58.722 Å
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