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- PDB-1uqd: SELF-COMPLEMENTARY DNA 5'-D(CGATCG)2, NMR, MINIMIZED AVERAGE STRUCTURE -

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Basic information

Entry
Database: PDB / ID: 1uqd
TitleSELF-COMPLEMENTARY DNA 5'-D(CGATCG)2, NMR, MINIMIZED AVERAGE STRUCTURE
ComponentsDNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
KeywordsDNA / DEOXYRIBONUCLEIC ACID
Function / homologyDNA
Function and homology information
MethodSOLUTION NMR
AuthorsLam, S.L. / Au-Yeung, S.C.F.
CitationJournal: J.Mol.Biol. / Year: 1997
Title: Sequence-specific local structural variations in solution structures of d(CGXX'CG)2 and d(CAXX'TG)2 self-complementary deoxyribonucleic acids.
Authors: Lam, S.L. / Au-Yeung, S.C.
History
DepositionJun 26, 1996Processing site: BNL
Revision 1.0Jan 27, 1997Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Mar 2, 2022Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_nmr_software / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site / _pdbx_nmr_software.name
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')
B: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')


Theoretical massNumber of molelcules
Total (without water)3,6182
Polymers3,6182
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)1 / -
Representative

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Components

#1: DNA chain DNA (5'-D(*CP*GP*AP*TP*CP*G)-3')


Mass: 1809.217 Da / Num. of mol.: 2 / Source method: obtained synthetically
Details: IN 10 MM SODIUM PHOSPHATE BUFFER AT 10 DEG. CELSIUS, 6.1 MM DOUBLE STRANDED CONCENTRATION

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR
NMR detailsText: IN 10 MM SODIUM PHOSPHATE BUFFER AT 10 DEGREES CELSIUS, 5.2 MM DOUBLE STRANDED CONCENTRATION

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Sample preparation

Sample conditionsTemperature: 283 K
Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

SoftwareName: AMBER / Classification: refinement
NMR softwareName: Amber / Version: 4
Developer: PEARLMAN,CASE,CALDWELL,SEIBEL,SINGH,WEINER, KOLLMAN
Classification: refinement
NMR ensembleConformers submitted total number: 1

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