- PDB-1u3m: NMR structure of the chicken prion protein fragment 128-242 -
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Basic information
Entry
Database: PDB / ID: 1u3m
Title
NMR structure of the chicken prion protein fragment 128-242
Components
prion-like protein
Keywords
MEMBRANE PROTEIN / PRION PROTEIN / TSE / PRP
Function / homology
Function and homology information
protein insertion into plasma membrane / Insertion of tail-anchored proteins into the endoplasmic reticulum membrane / : / : / : / cellular response to xenobiotic stimulus => GO:0071466 / : / : / regulation of glutamate receptor signaling pathway / regulation of calcium ion import across plasma membrane ...protein insertion into plasma membrane / Insertion of tail-anchored proteins into the endoplasmic reticulum membrane / : / : / : / cellular response to xenobiotic stimulus => GO:0071466 / : / : / regulation of glutamate receptor signaling pathway / regulation of calcium ion import across plasma membrane / aspartic-type endopeptidase inhibitor activity / glycosaminoglycan binding / regulation of potassium ion transmembrane transport / negative regulation of interleukin-17 production / negative regulation of dendritic spine maintenance / type 5 metabotropic glutamate receptor binding / cupric ion binding / negative regulation of calcineurin-NFAT signaling cascade / negative regulation of T cell receptor signaling pathway / negative regulation of interleukin-2 production / activation of protein kinase activity / cuprous ion binding / negative regulation of amyloid-beta formation / negative regulation of activated T cell proliferation / negative regulation of type II interferon production / positive regulation of protein tyrosine kinase activity / basement membrane / positive regulation of protein targeting to membrane / synaptic cleft / inclusion body / cellular response to copper ion / neuron projection maintenance / negative regulation of protein phosphorylation / positive regulation of protein localization to plasma membrane / protein destabilization / protein homooligomerization / negative regulation of DNA-binding transcription factor activity / terminal bouton / cellular response to amyloid-beta / positive regulation of peptidyl-tyrosine phosphorylation / positive regulation of neuron apoptotic process / signaling receptor activity / amyloid-beta binding / microtubule binding / protease binding / nuclear membrane / response to oxidative stress / learning or memory / membrane raft / copper ion binding / dendrite / calcium ion binding / positive regulation of gene expression / protein-containing complex binding / negative regulation of apoptotic process / Golgi apparatus / cell surface / endoplasmic reticulum / identical protein binding / nucleus / plasma membrane / cytosol / cytoplasm Similarity search - Function
Prion/Doppel protein, beta-ribbon domain / Major Prion Protein / Prion protein signature 1. / Prion protein signature 2. / Major prion protein N-terminal domain / Major prion protein bPrPp - N terminal / Prion protein / Major prion protein / Prion/Doppel protein, beta-ribbon domain / Prion/Doppel beta-ribbon domain superfamily ...Prion/Doppel protein, beta-ribbon domain / Major Prion Protein / Prion protein signature 1. / Prion protein signature 2. / Major prion protein N-terminal domain / Major prion protein bPrPp - N terminal / Prion protein / Major prion protein / Prion/Doppel protein, beta-ribbon domain / Prion/Doppel beta-ribbon domain superfamily / Prion/Doppel alpha-helical domain / Orthogonal Bundle / Mainly Alpha Similarity search - Domain/homology
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M
Radiation wavelength
Relative weight: 1
NMR spectrometer
Type
Manufacturer
Model
Field strength (MHz)
Spectrometer-ID
Bruker DRX
Bruker
DRX
500
1
Bruker DRX
Bruker
DRX
600
2
Bruker DRX
Bruker
DRX
750
3
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Processing
NMR software
Name
Version
Developer
Classification
DYANA
6
Guentert
structuresolution
DYANA
6
Guentert
refinement
Refinement
Method: torsion angle dynamics / Software ordinal: 1 Details: the structures are based on a total of 2012 restraints, 1889 are NOE-derived distance constraints, 123 dihedral angle restraints
NMR representative
Selection criteria: fewest violations
NMR ensemble
Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 100 / Conformers submitted total number: 20
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