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Yorodumi- PDB-1tgl: A SERINE PROTEASE TRIAD FORMS THE CATALYTIC CENTRE OF A TRIACYLGL... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1tgl | ||||||
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Title | A SERINE PROTEASE TRIAD FORMS THE CATALYTIC CENTRE OF A TRIACYLGLYCEROL LIPASE | ||||||
Components | TRIACYL-GLYCEROL ACYLHYDROLASE | ||||||
Keywords | HYDROLASE / CARBOXYLIC ESTERASE | ||||||
Function / homology | Fungal lipase-like domain / Lipase (class 3) / Lipases, serine active site. / triacylglycerol lipase / triglyceride lipase activity / lipid catabolic process / Alpha/Beta hydrolase fold / metal ion binding / Lipase Function and homology information | ||||||
Biological species | Rhizomucor miehei (fungus) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.9 Å | ||||||
Authors | Brady, L. / Brzozowski, A.M. / Derewenda, Z.S. / Dodson, E.J. / Dodson, G.G. / Tolley, S.P. / Turkenburg, J.P. / Christiansen, L. / Huge-Jensen, B. / Norskov, L. / Thim, L. | ||||||
Citation | Journal: Nature / Year: 1990 Title: A serine protease triad forms the catalytic centre of a triacylglycerol lipase. Authors: Brady, L. / Brzozowski, A.M. / Derewenda, Z.S. / Dodson, E. / Dodson, G. / Tolley, S. / Turkenburg, J.P. / Christiansen, L. / Huge-Jensen, B. / Norskov, L. / Thim, L. / Menge, U. #1: Journal: Lipids / Year: 1988 Title: Rhizomucor Miehei Triglyceride Lipase is Synthesized as a Precursor Authors: Boel, E. / Huge-Jensen, B. / Christensen, M. / Thim, L. / Fiil, N.P. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1tgl.cif.gz | 35.3 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1tgl.ent.gz | 12.4 KB | Display | PDB format |
PDBx/mmJSON format | 1tgl.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/tg/1tgl ftp://data.pdbj.org/pub/pdb/validation_reports/tg/1tgl | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: RESIDUES PRO 34, PRO 209, PRO 229, AND PRO 250 ARE CIS PROLINES. |
-Components
#1: Protein | Mass: 29508.945 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Rhizomucor miehei (fungus) / References: UniProt: P19515, triacylglycerol lipase |
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Sequence details | RESIDUE 156 IN THIS ENTRY IS ASP AS IDENTIFIED BY ELECTRON DENSITY. IN THE PAPER CITED AS REFERENCE ...RESIDUE 156 IN THIS ENTRY IS ASP AS IDENTIFIED |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.5 Å3/Da / Density % sol: 50.82 % | ||||||||||||||||||||
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Crystal grow | *PLUS pH: 8.05 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.9 Å / Num. obs: 21165 / % possible obs: 87.8 % / Rmerge(I) obs: 0.081 |
-Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||
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Refinement | Resolution: 1.9→7.5 Å / Rfactor obs: 0.138 | ||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.9→7.5 Å
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Refinement | *PLUS Num. reflection obs: 19305 / Highest resolution: 1.9 Å / Lowest resolution: 7.5 Å / Rfactor all: 0.138 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS Biso mean: 23.3 Å2 | ||||||||||||
Refine LS restraints | *PLUS
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