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Yorodumi- PDB-1tfd: HIGH-RESOLUTION X-RAY STUDIES ON RABBIT SERUM TRANSFERRIN: PRELIM... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1tfd | ||||||
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Title | HIGH-RESOLUTION X-RAY STUDIES ON RABBIT SERUM TRANSFERRIN: PRELIMINARY STRUCTURE ANALYSIS OF THE N-TERMINAL HALF-MOLECULE AT 2.3 ANGSTROMS RESOLUTION | ||||||
Components | TRANSFERRIN | ||||||
Keywords | IRON TRANSPORT PROTEIN | ||||||
Function / homology | Function and homology information ferric iron binding / iron ion transport / intracellular iron ion homeostasis / extracellular space Similarity search - Function | ||||||
Biological species | Oryctolagus cuniculus (rabbit) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.3 Å | ||||||
Authors | Sarra, R. / Lindley, P.F. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.B / Year: 1990 Title: High-Resolution X-Ray Studies on Rabbit Serum Transferrin: Preliminary Structure Analysis of the N-Terminal Half-Molecule at 2.3 Angstroms Resolution Authors: Sarra, R. / Garratt, R. / Gorinsky, B. / Jhoti, H. / Lindley, P. #1: Journal: Biochemistry / Year: 1988 Title: Molecular Structure of Serum Transferrin at 3.3-Angstroms Resolution Authors: Bailey, S. / Evans, R.W. / Garratt, R.C. / Gorinsky, B. / Hasnain, S. / Horsburgh, C. / Jhoti, H. / Lindley, P.F. / Mydin, A. / Sarra, R. / Watson, J.L. #2: Journal: J.Mol.Biol. / Year: 1986 Title: Preliminary X-Ray Data for an N-Terminal Fragment of Rabbit Serum Transferrin Authors: Sarra, R. / Lindley, P.F. #3: Journal: J.Mol.Biol. / Year: 1976 Title: Crystallization and Preliminary X-Ray Investigation of Rabbit Plasma Transferrin Authors: Al-Hilal, D. / Baker, E. / Carlisle, C.H. / Gorinsky, B. / Horsburgh, R.C. / Lindley, P.F. / Moss, D.S. / Schneider, H. / Stimpson, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1tfd.cif.gz | 59.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1tfd.ent.gz | 46.2 KB | Display | PDB format |
PDBx/mmJSON format | 1tfd.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/tf/1tfd ftp://data.pdbj.org/pub/pdb/validation_reports/tf/1tfd | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: THE DISULFIDE BRIDGE NORMALLY PRESENT BETWEEN RESIDUES CYS 137 AND CYS 331 COULD NOT BE BUILT BECAUSE RESIDUE 331 IS NOT PRESENT IN THIS STRUCTURE. |
-Components
#1: Protein | Mass: 33548.133 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Oryctolagus cuniculus (rabbit) / References: UniProt: P19134 |
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#2: Chemical | ChemComp-CO3 / |
#3: Chemical | ChemComp-FE / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.68 Å3/Da / Density % sol: 54.02 % | ||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 279 K / pH: 7 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 2.3 Å / Num. obs: 15395 / % possible obs: 85.8 % / Rmerge(I) obs: 0.061 |
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-Processing
Software | Name: RESTRAIN / Classification: refinement | ||||||||||||
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Refinement | Rfactor obs: 0.225 / Highest resolution: 2.3 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2.3 Å
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Refine LS restraints |
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