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- PDB-1szz: Crystal structure of peptide deformylase from Leptospira Interrog... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1szz | ||||||
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Title | Crystal structure of peptide deformylase from Leptospira Interrogans complexed with inhibitor actinonin | ||||||
![]() | Peptide deformylase | ||||||
![]() | HYDROLASE / half-open conformation / BB2 complexed | ||||||
Function / homology | ![]() co-translational protein modification / peptide deformylase / peptide deformylase activity / translation / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Zhou, Z. / Song, X. / Li, Y. / Gong, W. | ||||||
![]() | ![]() Title: Novel conformational states of peptide deformylase from pathogenic bacterium Leptospira interrogans: implications for population shift Authors: Zhou, Z. / Song, X. / Gong, W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 277.1 KB | Display | ![]() |
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PDB format | ![]() | 223.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 2.4 MB | Display | ![]() |
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Full document | ![]() | 2.4 MB | Display | |
Data in XML | ![]() | 55.9 KB | Display | |
Data in CIF | ![]() | 70.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1sv2C ![]() 1vevC ![]() 1veyC ![]() 1vezC ![]() 1rn5 S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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4 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 20260.133 Da / Num. of mol.: 8 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() #2: Chemical | ChemComp-ZN / #3: Chemical | ChemComp-BB2 / #4: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.86 Å3/Da / Density % sol: 57 % |
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Crystal grow | Temperature: 277 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: 10% PEG1k, PEG8k, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K |
-Data collection
Diffraction | Mean temperature: 293 K |
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Diffraction source | Source: ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Jun 23, 2001 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.54 Å / Relative weight: 1 |
Reflection | Resolution: 3.3→20 Å / Num. all: 27414 / Num. obs: 23337 / % possible obs: 85.1 % / Observed criterion σ(F): 27414 / Observed criterion σ(I): 0 |
Reflection shell | Resolution: 3.3→3.51 Å / % possible all: 35.1 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: 1RN5 ![]() 1rn5 Resolution: 3.3→20 Å / Cross valid method: THROUGHOUT / σ(F): 1 / Stereochemistry target values: Engh & Huber
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 3.3→20 Å
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Refine LS restraints |
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