PDB-1sx4: GroEL-GroES-ADP7

ID or keywords:

Entry

Database: PDB / ID: 1sx4

Title

GroEL-GroES-ADP7

Components

groEL protein
groES protein

Keywords

CHAPERONE / molecular chaperone / protein folding

Function / homology

Function and homology information

GroEL-GroES complex / chaperonin ATPase / virion assembly / : / isomerase activity / protein folding chaperone / ATP-dependent protein folding chaperone / response to radiation / unfolded protein binding / protein folding ...
Similarity search - Function

Biological species

Escherichia coli (E. coli)

Method

X-RAY DIFFRACTION /

MOLECULAR REPLACEMENT / Resolution: 3 Å

Authors

Chaudhry, C. / Horwich, A.L. / Brunger, A.T. / Adams, P.D.

Citation

Journal: J.Mol.Biol. / Year: 2004
Title: Exploring the structural dynamics of the E.coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states.
Authors: Chaudhry, C. / Horwich, A.L. / Brunger, A.T. / Adams, P.D.

History

Deposition	Mar 30, 2004	Deposition site: RCSB / Processing site: RCSB
Revision 1.0	Mar 1, 2005	Provider: repository / Type: Initial release
Revision 1.1	Apr 30, 2008	Group: Version format compliance
Revision 1.2	Jul 13, 2011	Group: Advisory / Version format compliance
Revision 1.3	Mar 26, 2014	Group: Other
Revision 1.4	Oct 11, 2017	Group: Refinement description / Category: software
Revision 1.5	Feb 14, 2024	Group: Data collection / Database references ...Data collection / Database references / Derived calculations / Refinement description Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_struct_conn_angle / struct_conn / struct_ncs_dom_lim / struct_site Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_struct_conn_angle.ptnr1_auth_comp_id / _pdbx_struct_conn_angle.ptnr1_auth_seq_id / _pdbx_struct_conn_angle.ptnr1_label_asym_id / _pdbx_struct_conn_angle.ptnr1_label_atom_id / _pdbx_struct_conn_angle.ptnr1_label_comp_id / _pdbx_struct_conn_angle.ptnr1_label_seq_id / _pdbx_struct_conn_angle.ptnr3_auth_comp_id / _pdbx_struct_conn_angle.ptnr3_auth_seq_id / _pdbx_struct_conn_angle.ptnr3_label_asym_id / _pdbx_struct_conn_angle.ptnr3_label_atom_id / _pdbx_struct_conn_angle.ptnr3_label_comp_id / _pdbx_struct_conn_angle.ptnr3_label_seq_id / _pdbx_struct_conn_angle.value / _struct_conn.pdbx_dist_value / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_ncs_dom_lim.beg_auth_comp_id / _struct_ncs_dom_lim.beg_label_asym_id / _struct_ncs_dom_lim.beg_label_seq_id / _struct_ncs_dom_lim.end_auth_comp_id / _struct_ncs_dom_lim.end_label_asym_id / _struct_ncs_dom_lim.end_label_seq_id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id

Structure viewer	Molecule: MolmilJmol/JSmol

-
Download

PDBx/mmCIF format	1sx4.cif.gz	1.3 MB	Display	PDBx/mmCIF format
PDB format	pdb1sx4.ent.gz	1.1 MB	Display	PDB format
PDBx/mmJSON format	1sx4.json.gz		Tree view	PDBx/mmJSON format
Others	Other downloads

-
Validation report

Summary document	1sx4_validation.pdf.gz	2.5 MB	Display	wwPDB validaton report
Full document	1sx4_full_validation.pdf.gz	2.8 MB	Display
Data in XML	1sx4_validation.xml.gz	283.9 KB	Display
Data in CIF	1sx4_validation.cif.gz	383.5 KB	Display
Arichive directory	https://data.pdbj.org/pub/pdb/validation_reports/sx/1sx4 ftp://data.pdbj.org/pub/pdb/validation_reports/sx/1sx4	HTTPS FTP

-
Related structure data

Related structure data	1ss8C 1svtC 1sx3C 1aon 1pf9 C: citing same article (ref.)
Similar structure data	1pf9-d 3zpz-d 1pcq-d 1gru-d 2c7c-d 3zq1-d 4v4o-2 4v4o-1 3zq0-d 1180 Search similar-shape structures by Omokage search (details) Similarity search - Function & homologyF&H Search Similarity search - FunctionF&H Search Similarity search - HomologyF&H Search

-
Links

PDB pages	PDBj / wwPDB / NCBI
Related items in Molecule of the Month	#32 - Aug 2002 Chaperones similarity (19) #13 - Jan 2001 Alcohol Dehydrogenase similarity (1)

Deposited unit

A: groEL protein

B: groEL protein

C: groEL protein

D: groEL protein

E: groEL protein

F: groEL protein

G: groEL protein

H: groEL protein

I: groEL protein

J: groEL protein

K: groEL protein

L: groEL protein

M: groEL protein

N: groEL protein

O: groES protein

P: groES protein

Q: groES protein

R: groES protein

S: groES protein

T: groES protein

U: groES protein

hetero molecules

849 kDa, 21 polymers
Search similar-shape structures of this assembly by Omokage search (details)

1

Idetical with deposited unit
defined by author&software

Unit cell

Length a, b, c (Å)	255.260, 265.250, 184.400
Angle α, β, γ (deg.)	90.00, 90.00, 90.00
Int Tables number	18
Space group name H-M	P2₁2₁2

Noncrystallographic symmetry (NCS)

NCS domain:
NCS domain segments:

Refine code: 1

Dom-ID	Component-ID	Ens-ID	Beg auth comp-ID	Beg label comp-ID	End auth comp-ID	End label comp-ID	Auth asym-ID	Label asym-ID	Auth seq-ID	Label seq-ID
1	1	1	ALA	ALA	SER	SER	A	A	2 - 135	1 - 134
2	1	1	ALA	ALA	SER	SER	B	B	2 - 135	1 - 134
3	1	1	ALA	ALA	SER	SER	C	C	2 - 135	1 - 134
4	1	1	ALA	ALA	SER	SER	D	D	2 - 135	1 - 134
5	1	1	ALA	ALA	SER	SER	E	E	2 - 135	1 - 134
6	1	1	ALA	ALA	SER	SER	F	F	2 - 135	1 - 134
7	1	1	ALA	ALA	SER	SER	G	G	2 - 135	1 - 134
8	2	1	GLY	GLY	PRO	PRO	A	A	410 - 525	409 - 524
9	2	1	GLY	GLY	PRO	PRO	B	B	410 - 525	409 - 524
10	2	1	GLY	GLY	PRO	PRO	C	C	410 - 525	409 - 524
11	2	1	GLY	GLY	PRO	PRO	D	D	410 - 525	409 - 524
12	2	1	GLY	GLY	PRO	PRO	E	E	410 - 525	409 - 524
13	2	1	GLY	GLY	PRO	PRO	F	F	410 - 525	409 - 524
14	2	1	GLY	GLY	PRO	PRO	G	G	410 - 525	409 - 524
15	3	1	ADP	ADP	MG	MG	A	W - V	600 - 601
16	3	1	ADP	ADP	MG	MG	B	Y - X	600 - 601
17	3	1	ADP	ADP	MG	MG	C	AA - Z	600 - 601
18	3	1	ADP	ADP	MG	MG	D	CA - BA	600 - 601
19	3	1	ADP	ADP	MG	MG	E	EA - DA	600 - 601
20	3	1	ADP	ADP	MG	MG	F	GA - FA	600 - 601
21	3	1	ADP	ADP	MG	MG	G	IA - HA	600 - 601
1	1	2	VAL	VAL	VAL	VAL	A	A	136 - 190	135 - 189
2	1	2	VAL	VAL	VAL	VAL	B	B	136 - 190	135 - 189
3	1	2	VAL	VAL	VAL	VAL	C	C	136 - 190	135 - 189
4	1	2	VAL	VAL	VAL	VAL	D	D	136 - 190	135 - 189
5	1	2	VAL	VAL	VAL	VAL	E	E	136 - 190	135 - 189
6	1	2	VAL	VAL	VAL	VAL	F	F	136 - 190	135 - 189
7	1	2	VAL	VAL	VAL	VAL	G	G	136 - 190	135 - 189
8	2	2	GLY	GLY	GLU	GLU	A	A	375 - 409	374 - 408
9	2	2	GLY	GLY	GLU	GLU	B	B	375 - 409	374 - 408
10	2	2	GLY	GLY	GLU	GLU	C	C	375 - 409	374 - 408
11	2	2	GLY	GLY	GLU	GLU	D	D	375 - 409	374 - 408
12	2	2	GLY	GLY	GLU	GLU	E	E	375 - 409	374 - 408
13	2	2	GLY	GLY	GLU	GLU	F	F	375 - 409	374 - 408
14	2	2	GLY	GLY	GLU	GLU	G	G	375 - 409	374 - 408
1	1	3	GLU	GLU	GLY	GLY	A	A	191 - 374	190 - 373
2	1	3	GLU	GLU	GLY	GLY	B	B	191 - 374	190 - 373
3	1	3	GLU	GLU	GLY	GLY	C	C	191 - 374	190 - 373
4	1	3	GLU	GLU	GLY	GLY	D	D	191 - 374	190 - 373
5	1	3	GLU	GLU	GLY	GLY	E	E	191 - 374	190 - 373
6	1	3	GLU	GLU	GLY	GLY	F	F	191 - 374	190 - 373
7	1	3	GLU	GLU	GLY	GLY	G	G	191 - 374	190 - 373
1	1	4	ALA	ALA	SER	SER	H	H	2 - 135	1 - 134
2	1	4	ALA	ALA	SER	SER	I	I	2 - 135	1 - 134
3	1	4	ALA	ALA	SER	SER	J	J	2 - 135	1 - 134
4	1	4	ALA	ALA	SER	SER	K	K	2 - 135	1 - 134
5	1	4	ALA	ALA	SER	SER	L	L	2 - 135	1 - 134
6	1	4	ALA	ALA	SER	SER	M	M	2 - 135	1 - 134
7	1	4	ALA	ALA	SER	SER	N	N	2 - 135	1 - 134
8	2	4	GLY	GLY	PRO	PRO	H	H	410 - 525	409 - 524
9	2	4	GLY	GLY	PRO	PRO	I	I	410 - 525	409 - 524
10	2	4	GLY	GLY	PRO	PRO	J	J	410 - 525	409 - 524
11	2	4	GLY	GLY	PRO	PRO	K	K	410 - 525	409 - 524
12	2	4	GLY	GLY	PRO	PRO	L	L	410 - 525	409 - 524
13	2	4	GLY	GLY	PRO	PRO	M	M	410 - 525	409 - 524
14	2	4	GLY	GLY	PRO	PRO	N	N	410 - 525	409 - 524
1	1	5	VAL	VAL	VAL	VAL	H	H	136 - 190	135 - 189
2	1	5	VAL	VAL	VAL	VAL	I	I	136 - 190	135 - 189
3	1	5	VAL	VAL	VAL	VAL	J	J	136 - 190	135 - 189
4	1	5	VAL	VAL	VAL	VAL	K	K	136 - 190	135 - 189
5	1	5	VAL	VAL	VAL	VAL	L	L	136 - 190	135 - 189
6	1	5	VAL	VAL	VAL	VAL	M	M	136 - 190	135 - 189
7	1	5	VAL	VAL	VAL	VAL	N	N	136 - 190	135 - 189
8	2	5	GLY	GLY	GLU	GLU	H	H	375 - 409	374 - 408
9	2	5	GLY	GLY	GLU	GLU	I	I	375 - 409	374 - 408
10	2	5	GLY	GLY	GLU	GLU	J	J	375 - 409	374 - 408
11	2	5	GLY	GLY	GLU	GLU	K	K	375 - 409	374 - 408
12	2	5	GLY	GLY	GLU	GLU	L	L	375 - 409	374 - 408
13	2	5	GLY	GLY	GLU	GLU	M	M	375 - 409	374 - 408
14	2	5	GLY	GLY	GLU	GLU	N	N	375 - 409	374 - 408
1	1	6	GLU	GLU	GLY	GLY	H	H	191 - 374	190 - 373
2	1	6	GLU	GLU	GLY	GLY	I	I	191 - 374	190 - 373
3	1	6	GLU	GLU	GLY	GLY	J	J	191 - 374	190 - 373
4	1	6	GLU	GLU	GLY	GLY	K	K	191 - 374	190 - 373
5	1	6	GLU	GLU	GLY	GLY	L	L	191 - 374	190 - 373
6	1	6	GLU	GLU	GLY	GLY	M	M	191 - 374	190 - 373
7	1	6	GLU	GLU	GLY	GLY	N	N	191 - 374	190 - 373
1	1	7	MET	MET	ALA	ALA	O	O	1 - 97	1 - 97
2	1	7	MET	MET	ALA	ALA	P	P	1 - 97	1 - 97
3	1	7	MET	MET	ALA	ALA	Q	Q	1 - 97	1 - 97
4	1	7	MET	MET	ALA	ALA	R	R	1 - 97	1 - 97
5	1	7	MET	MET	ALA	ALA	S	S	1 - 97	1 - 97
6	1	7	MET	MET	ALA	ALA	T	T	1 - 97	1 - 97
7	1	7	MET	MET	ALA	ALA	U	U	1 - 97	1 - 97

NCS ensembles :

ID
1
2
3
4
5
6
7

#1: Protein	groEL protein / Protein Cpn60 / 60 kDa chaperonin Mass: 55220.105 Da / Num. of mol.: 14 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) Gene: GROL, GROEL, MOPA, B4143, C5227, Z5748, ECS5124, SF4297, S4564 Production host: Escherichia coli (E. coli) / References: UniProt: P0A6F5
#2: Protein	groES protein / Protein Cpn10 / 10 kDa chaperonin Mass: 10400.938 Da / Num. of mol.: 7 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) Gene: GROS, GROES, MOPB, B4142, C5226, Z5747, ECS5123, SF4296, S4563 Production host: Escherichia coli (E. coli) / References: UniProt: P0A6F9
#3: Chemical	ChemComp-MG / MAGNESIUM ION Mass: 24.305 Da / Num. of mol.: 7 / Source method: obtained synthetically / Formula: Mg
#4: Chemical	ChemComp-ADP / ADENOSINE-5'-DIPHOSPHATE Mass: 427.201 Da / Num. of mol.: 7 / Source method: obtained synthetically / Formula: C₁₀H₁₅N₅O₁₀P₂ / Comment: ADP, energy-carrying molecule*YM
#5: Water	ChemComp-HOH / water Mass: 18.015 Da / Num. of mol.: 181 / Source method: isolated from a natural source / Formula: H₂O

-
Experiment

Experiment	Method: X-RAY DIFFRACTION / Number of used crystals: 1

-
Sample preparation

Crystal	Density Matthews: 3.69 Å³/Da / Density % sol: 66.67 %
Crystal grow	Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 5.5 Details: PEG 3000, cacodylic acid, sodium glutamate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K

-
Data collection

Diffraction

ID	Crystal-ID
tls	1
1	1

Radiation

Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray

Radiation wavelength

Relative weight: 1

Reflection

Resolution: 3→40 Å / Num. all: 241858 / Num. obs: 241858

-
Processing

Software

Name	Version	Classification
REFMAC	refmac_5.1.19	refinement
DENZO		data reduction
SCALEPACK		data scaling
X-PLOR		phasing

Refinement

Method to determine structure:

MOLECULAR REPLACEMENT / Resolution: 3→40 Å / Cor.coef. F_o:F_c: 0.889 / Cor.coef. F_o:F_c free: 0.869 / SU B: 22.63 / SU ML: 0.4 / TLS residual ADP flag: LIKELY RESIDUAL / σ(F): 0 / ESU R Free: 0.446

	R_factor	Num. reflection	% reflection
R_free	0.2873	12042	4.979 %
R_work	0.2575	-	-
all	0.259	241858	-
obs	0.259	241858	-

Solvent computation

Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.4 Å / Solvent model: MASK BULK SOLVENT

Displacement parameters

B_iso mean: 2.458 Å²

	B_aniso -1	B_aniso -2	B_aniso -3
1-	-3.182 Å²	0 Å²	0 Å²
2-	-	-2.907 Å²	0 Å²
3-	-	-	6.089 Å²

Refinement step

Cycle: LAST / Resolution: 3→40 Å

	Protein	Nucleic acid	Ligand	Solvent	Total
Num. atoms	59080	0	196	181	59457

Refine LS restraints

Refine-ID	Type	Dev ideal	Dev ideal target	Number
X-RAY DIFFRACTION	r_bond_refined_d	0.024	0.022	59703
X-RAY DIFFRACTION	r_angle_refined_deg	2.034	1.988	80619
X-RAY DIFFRACTION	r_dihedral_angle_1_deg	6.691	5	7994
X-RAY DIFFRACTION	r_chiral_restr	0.122	0.2	9800
X-RAY DIFFRACTION	r_gen_planes_refined	0.006	0.02	43302
X-RAY DIFFRACTION	r_xyhbond_nbd_refined	0.172	0.2	2061
X-RAY DIFFRACTION	r_metal_ion_refined	0.199	0.2	14
X-RAY DIFFRACTION	r_symmetry_vdw_refined	0.315	0.2	103
X-RAY DIFFRACTION	r_symmetry_hbond_refined	0.248	0.2	10
X-RAY DIFFRACTION	r_mcbond_it	0.236	1.5	39515
X-RAY DIFFRACTION	r_mcangle_it	0.384	2	63273
X-RAY DIFFRACTION	r_scbond_it	0.702	3	20188
X-RAY DIFFRACTION	r_scangle_it	1.018	4.5	17346

Refine LS restraints NCS

Refine-ID: X-RAY DIFFRACTION

Ens-ID	Dom-ID	Auth asym-ID	Number	Type	Rms dev position (Å)	Weight position
1	1	A	1839	tight positional	0.09	0.05
1	2	B	1839	tight positional	0.08	0.05
1	3	C	1839	tight positional	0.1	0.05
1	4	D	1839	tight positional	0.09	0.05
1	5	E	1839	tight positional	0.08	0.05
1	6	F	1839	tight positional	0.08	0.05
1	7	G	1839	tight positional	0.1	0.05
2	1	A	647	tight positional	0.08	0.05
2	2	B	647	tight positional	0.07	0.05
2	3	C	647	tight positional	0.07	0.05
2	4	D	647	tight positional	0.07	0.05
2	5	E	647	tight positional	0.06	0.05
2	6	F	647	tight positional	0.06	0.05
2	7	G	647	tight positional	0.07	0.05
3	1	A	1398	tight positional	0.03	0.05
3	2	B	1398	tight positional	0.03	0.05
3	3	C	1398	tight positional	0.03	0.05
3	4	D	1398	tight positional	0.03	0.05
3	5	E	1398	tight positional	0.03	0.05
3	6	F	1398	tight positional	0.03	0.05
3	7	G	1398	tight positional	0.03	0.05
4	1	H	1811	tight positional	0.09	0.05
4	2	I	1811	tight positional	0.11	0.05
4	3	J	1811	tight positional	0.09	0.05
4	4	K	1811	tight positional	0.08	0.05
4	5	L	1811	tight positional	0.08	0.05
4	6	M	1811	tight positional	0.1	0.05
4	7	N	1811	tight positional	0.09	0.05
5	1	H	647	tight positional	0.05	0.05
5	2	I	647	tight positional	0.06	0.05
5	3	J	647	tight positional	0.06	0.05
5	4	K	647	tight positional	0.05	0.05
5	5	L	647	tight positional	0.05	0.05
5	6	M	647	tight positional	0.06	0.05
5	7	N	647	tight positional	0.06	0.05
6	1	H	1398	tight positional	0.04	0.05
6	2	I	1398	tight positional	0.04	0.05
6	3	J	1398	tight positional	0.04	0.05
6	4	K	1398	tight positional	0.04	0.05
6	5	L	1398	tight positional	0.04	0.05
6	6	M	1398	tight positional	0.04	0.05
6	7	N	1398	tight positional	0.04	0.05
7	1	O	728	tight positional	0.03	0.05
7	2	P	728	tight positional	0.03	0.05
7	3	Q	728	tight positional	0.03	0.05
7	4	R	728	tight positional	0.03	0.05
7	5	S	728	tight positional	0.03	0.05
7	6	T	728	tight positional	0.03	0.05
7	7	U	728	tight positional	0.03	0.05
1	1	A	1839	tight thermal	0.15	0.5
1	2	B	1839	tight thermal	0.13	0.5
1	3	C	1839	tight thermal	0.16	0.5
1	4	D	1839	tight thermal	0.15	0.5
1	5	E	1839	tight thermal	0.12	0.5
1	6	F	1839	tight thermal	0.12	0.5
1	7	G	1839	tight thermal	0.14	0.5
2	1	A	647	tight thermal	0.11	0.5
2	2	B	647	tight thermal	0.09	0.5
2	3	C	647	tight thermal	0.1	0.5
2	4	D	647	tight thermal	0.1	0.5
2	5	E	647	tight thermal	0.08	0.5
2	6	F	647	tight thermal	0.09	0.5
2	7	G	647	tight thermal	0.09	0.5
3	1	A	1398	tight thermal	0.03	0.5
3	2	B	1398	tight thermal	0.03	0.5
3	3	C	1398	tight thermal	0.03	0.5
3	4	D	1398	tight thermal	0.03	0.5
3	5	E	1398	tight thermal	0.03	0.5
3	6	F	1398	tight thermal	0.03	0.5
3	7	G	1398	tight thermal	0.03	0.5
4	1	H	1811	tight thermal	0.14	0.5
4	2	I	1811	tight thermal	0.2	0.5
4	3	J	1811	tight thermal	0.14	0.5
4	4	K	1811	tight thermal	0.13	0.5
4	5	L	1811	tight thermal	0.12	0.5
4	6	M	1811	tight thermal	0.14	0.5
4	7	N	1811	tight thermal	0.14	0.5
5	1	H	647	tight thermal	0.07	0.5
5	2	I	647	tight thermal	0.08	0.5
5	3	J	647	tight thermal	0.08	0.5
5	4	K	647	tight thermal	0.07	0.5
5	5	L	647	tight thermal	0.06	0.5
5	6	M	647	tight thermal	0.08	0.5
5	7	N	647	tight thermal	0.08	0.5
6	1	H	1398	tight thermal	0.04	0.5
6	2	I	1398	tight thermal	0.05	0.5
6	3	J	1398	tight thermal	0.05	0.5
6	4	K	1398	tight thermal	0.04	0.5
6	5	L	1398	tight thermal	0.04	0.5
6	6	M	1398	tight thermal	0.04	0.5
6	7	N	1398	tight thermal	0.04	0.5
7	1	O	728	tight thermal	0.03	0.5
7	2	P	728	tight thermal	0.03	0.5
7	3	Q	728	tight thermal	0.03	0.5
7	4	R	728	tight thermal	0.03	0.5
7	5	S	728	tight thermal	0.03	0.5
7	6	T	728	tight thermal	0.03	0.5
7	7	U	728	tight thermal	0.03	0.5

LS refinement shell

Resolution (Å)	R_factor R_free	Num. reflection R_free	R_factor R_work	Num. reflection R_work	Refine-ID	Num. reflection all
3-3.0775	0.381	801	0.347	15875	X-RAY DIFFRACTION	16676
3.077-3.1613	0.354	844	0.324	16193	X-RAY DIFFRACTION	17037
3.161-3.2523	0.33	894	0.308	15772	X-RAY DIFFRACTION	16666
3.252-3.3517	0.347	795	0.301	15591	X-RAY DIFFRACTION	16386
3.352-3.4609	0.331	783	0.286	15051	X-RAY DIFFRACTION	15834
3.461-3.5814	0.297	736	0.261	14685	X-RAY DIFFRACTION	15421
3.581-3.7154	0.286	758	0.255	14133	X-RAY DIFFRACTION	14891
3.715-3.8657	0.273	732	0.254	13541	X-RAY DIFFRACTION	14273
3.866-4.0359	0.265	680	0.24	13104	X-RAY DIFFRACTION	13784
4.036-4.2308	0.271	645	0.226	12465	X-RAY DIFFRACTION	13110
4.231-4.4568	0.263	621	0.222	11837	X-RAY DIFFRACTION	12458
4.457-4.7235	0.263	600	0.229	11249	X-RAY DIFFRACTION	11849
4.724-5.0447	0.27	539	0.24	10561	X-RAY DIFFRACTION	11100
5.045-5.4416	0.276	520	0.264	9971	X-RAY DIFFRACTION	10491
5.442-5.95	0.329	515	0.293	9225	X-RAY DIFFRACTION	9740
5.95-6.634	0.313	445	0.278	8422	X-RAY DIFFRACTION	8867
6.634-7.6254	0.237	380	0.216	7511	X-RAY DIFFRACTION	7891
7.625-9.2555	0.219	333	0.187	6413	X-RAY DIFFRACTION	6746
9.255-12.7523	0.206	263	0.191	5092	X-RAY DIFFRACTION	5355
12.752-40	0.373	158	0.388	3125	X-RAY DIFFRACTION	3283

Refinement TLS params.

Method: refined / Refine-ID: X-RAY DIFFRACTION

ID	L11 (°²)	L12 (°²)	L13 (°²)	L22 (°²)	L23 (°²)	L33 (°²)	S11 (Å °)	S12 (Å °)	S13 (Å °)	S21 (Å °)	S22 (Å °)	S23 (Å °)	S31 (Å °)	S32 (Å °)	S33 (Å °)	T11 (Å²)	T12 (Å²)	T13 (Å²)	T22 (Å²)	T23 (Å²)	T33 (Å²)	Origin x (Å)	Origin y (Å)	Origin z (Å)
1	2.8879	-1.0494	-0.178	3.4732	-0.4575	0.422	-0.0708	0.1183	-0.0244	0.0879	0.1037	0.0451	0.0454	-0.1348	-0.0329	0.2261	-0.0164	0.0227	0.2942	-0.0932	0.1408	33.381	-53.649	-12.13
2	9.2516	4.8973	0.3244	6.9619	0.3313	1.8003	-0.2333	0.2454	-0.9995	-0.4165	0.0652	-0.0448	0.0213	-0.5402	0.168	0.3596	0.0027	-0.0107	0.6374	-0.132	0.6205	17.302	-46.908	-27.752
3	8.6862	1.7077	-3.825	8.2365	-0.4768	18.2074	0.4245	-1.2334	0.6241	1.6899	-0.3354	1.6371	0.1707	-1.1105	-0.0891	1.8684	-0.2453	0.4983	1.8107	-0.4898	1.3227	27.946	-35.383	-48.371
4	4.7889	-0.1742	0.166	1.177	-0.2571	0.7777	-0.0256	-0.0441	-0.0604	-0.0346	-0.0909	0.3798	0.2103	-0.1582	0.1165	0.2871	-0.0406	0.0529	0.2722	-0.1282	0.4273	51.867	-89.048	-12.293
5	-0.3595	-2.6008	-1.0068	13.7994	-2.1573	5.1926	-0.2851	0.686	0.4773	-1.2283	-0.083	0.6881	1.048	-0.3453	0.3681	0.5547	-0.1104	0.1457	0.7673	-0.28	0.6338	36.276	-97.579	-27.718
6	4.6069	-0.7785	-1.1512	8.684	-4.5384	16.4341	-0.3026	-1.2401	-0.802	1.6515	0.5106	1.3341	0.9352	-0.9161	-0.208	2.1783	0.0406	0.5597	2.2175	0.2224	1.501	33.988	-82.047	-48.448
7	3.5749	1.3047	0.2202	2.9962	-0.167	0.5058	0.066	0.0024	-0.0823	0.0154	-0.096	0.46	0.1638	0.0938	0.03	0.3154	0.0119	0.0571	0.2409	-0.0206	0.0125	91.148	-96.411	-12.422
8	7.401	-5.515	-0.6864	7.555	-0.3624	4.0679	-0.0568	0.5831	0.2686	-0.5552	0.0034	-0.6909	0.5423	0.3942	0.0534	0.6779	-0.0661	0.082	0.426	-0.0989	0.6271	88.143	-113.842	-27.986
9	12.8209	-0.7029	2.0696	4.9174	-3.8243	16.8845	-0.0423	-2.9493	-2.2854	0.8704	0.4313	0.3785	0.8498	-0.34	-0.389	1.8421	0.1339	0.207	2.147	0.6485	1.3736	74.433	-105.783	-48.478
10	2.088	-0.113	0.0457	3.6753	0.2053	0.4083	-0.0205	0.138	-0.0529	0.0906	0.0366	-0.045	-0.0252	0.1287	-0.0162	0.2314	-0.0219	0.0081	0.3433	0.0919	0.1977	121.363	-70.245	-12.168
11	10.0075	3.2331	-0.3652	1.9077	0.0296	2.714	0.0321	0.5023	-0.0431	-0.2614	-0.0561	0.0324	0.1138	0.7208	0.024	0.4337	0.0483	0.075	0.6567	0.1456	0.448	132.918	-83.384	-27.714
12	10.1983	3.015	4.3656	6.6054	-0.4638	19.5776	1.1303	-2.0791	-1.6983	1.4357	-0.7998	-1.3815	0.9688	0.8959	-0.3306	1.7903	-0.2189	-0.351	2.1553	0.8336	1.3815	118.258	-89.014	-48.315
13	4.4382	-0.3192	0.0357	2.7415	0.3584	0.3712	-0.0811	-0.0715	0.1477	0.0062	0.0237	-0.429	-0.1216	0.2094	0.0574	0.2812	-0.0604	-0.0525	0.369	0.1691	0.6773	120.108	-30.198	-12.311
14	0.0626	3.579	0.18	11.4539	0.6543	4.2648	-0.1483	0.6026	-0.4381	-0.9012	-0.0158	-0.455	-0.7352	0.6773	0.1641	0.5655	-0.0216	-0.058	0.9106	0.3089	0.9647	137.83	-29.479	-27.719
15	3.2634	1.4833	3.0907	9.0599	4.4942	18.9199	0.3614	-0.43	0.3951	1.6885	0.5053	-1.8146	-0.3265	1.4429	-0.8667	2.0285	-0.0441	-0.5514	2.0838	0.0465	1.5799	133.058	-44.404	-48.443
16	3.2459	0.5942	0.0276	2.6107	0.5358	0.9132	-0.0146	0.0166	0.1088	-0.093	-0.0624	-0.5407	-0.3129	0.0744	0.077	0.3932	-0.0365	-0.0942	0.2637	0.0782	0.6536	87.996	-6.276	-12.492
17	5.8625	-5.2487	0.5064	10.6538	-1.7717	3.9311	0.2277	1.0471	0.3258	-0.2568	-0.0036	0.039	-0.6704	-0.0647	-0.2241	0.8284	-0.2662	0.0382	0.848	0.2117	1.1679	98.364	8.181	-27.875
18	6.1596	-1.3754	-1.0593	5.7068	1.1971	12.9502	0.0884	-1.721	1.4299	1.8986	0.5716	-0.8871	-1.0551	0.6314	-0.66	2.6521	0.0313	-0.3267	2.426	-0.5067	1.7965	107.359	-4.695	-48.684
19	1.9623	1.1475	-0.1139	3.5625	-0.3212	0.454	0.0216	0.1148	0.2232	0.0545	-0.1155	-0.1744	-0.1164	-0.0739	0.0939	0.2964	0.0199	-0.0478	0.2531	-0.0678	0.2331	49.269	-16.885	-12.559
20	10.6598	-1.4119	-0.3567	2.8019	0.9981	3.8792	0.0568	0.7532	0.2937	-0.4337	-0.2074	0.1729	-0.1557	-0.5988	0.1506	0.7929	-0.0182	-0.0764	0.4146	0.0198	0.6119	44.334	0.053	-28.207
21	9.1345	1.5887	-3.7725	3.9394	-0.2559	19.6933	1.0791	-1.8563	1.5951	1.0023	-0.3077	0.3867	-1.9022	-0.2302	-0.7714	2.0117	-0.1763	0.2622	1.9794	-0.6341	1.5487	60.147	-1.112	-48.676
22	3.9297	0.642	0.1258	5.2921	0.3358	1.3038	0.0024	-0.0059	-0.3431	-0.083	0.0528	0.5284	0.0814	-0.2292	-0.0552	0.2566	-0.0179	0.051	0.2831	0.0132	0.2734	40.684	-76.535	19.672
23	7.8133	-2.0198	4.8505	3.4486	-2.0219	6.8196	0.5778	0.3108	-0.3422	-0.0896	-0.1817	0.5076	0.9392	-0.3209	-0.396	0.7766	-0.2633	0.0775	0.8596	0.0152	0.712	26.082	-89.615	32.6
24	8.7337	1.1238	-0.5136	9.5365	0.4752	6.2279	-0.2399	0.2714	-0.9456	0.234	-0.033	1.3364	0.9894	-0.9501	0.2729	1.2078	-0.1831	-0.1395	1.0668	-0.0362	1.0364	33.933	-83.362	57.792
25	3.1583	-1.5692	-0.3967	4.5642	0.6275	0.9844	0.1584	0.0469	-0.2098	-0.052	-0.1139	0.1904	0.1051	-0.08	-0.0444	0.2533	0.0009	0.0025	0.2605	0.0048	0.1002	74.353	-97.326	19.67
26	5.2234	0.8526	2.4402	3.0527	3.5731	7.5079	-0.0363	0.279	-0.3729	0.5617	-0.0359	0.1115	0.6213	0.0166	0.0722	0.8491	0.0103	0.1207	0.5963	0.1332	0.326	75.7	-117.011	32.423
27	9.0373	-2.1172	-0.8468	8.9438	0.6653	5.8166	-0.4978	-0.6091	-1.1955	0.2533	0.4978	0.3226	1.3785	0.176	0	1.4287	0.1124	-0.0467	1.076	0.1004	0.4247	75.515	-107.464	57.726
28	7.6608	0.2197	-0.5316	2.3559	-0.1761	0.532	-0.1405	0.1345	-0.36	0.015	0.0951	-0.1917	0.0794	0.0709	0.0454	0.2625	0.0001	-0.0067	0.3132	-0.0213	0.1028	111.807	-84.031	19.772
29	3.8257	-1.3239	0.7247	9.9668	6.78	9.8744	0.3164	-0.0818	-0.3899	-0.342	-0.3505	0.375	0.142	0.6856	0.0341	0.5796	0.2465	0.0155	0.8887	0.1708	0.6041	127.517	-95.381	32.865
30	10.6143	-2.5974	0.1556	7.4183	-1.3659	5.5349	0.5016	-0.7658	-0.0403	0.0435	-0.8738	-0.3047	0.6311	1.3375	0.3722	1.0087	0.0325	0.0346	1.5961	-0.0152	0.3919	119.785	-89.33	58.012
31	4.5332	1.6612	-0.4458	4.8347	-0.634	1.2641	-0.0228	-0.0586	0.1798	-0.1228	-0.0531	-0.6771	-0.0183	0.3157	0.0759	0.2924	-0.0229	-0.0686	0.3683	0.0355	0.5173	124.694	-46.136	19.689
32	5.9994	-3.3191	-5.0908	1.8956	3.1673	9.4645	0.5102	-0.2078	0.0035	0.4766	-0.646	-0.2018	-0.5971	1.0829	0.1358	0.5934	-0.2538	-0.2186	1.2381	0.2159	1.0512	143.306	-40.689	32.74
33	10.5288	0.6758	-0.208	7.149	-0.9634	7.1601	-0.0626	0.1147	0.38	0.6223	-0.2174	-1.222	-0.8164	1.7412	0.28	1.185	-0.4622	-0.0252	1.4767	-0.0679	1.107	133.25	-43.156	57.811
34	4.0478	-0.9436	0.2264	5.8884	-0.9201	1.6281	0.1694	0.1371	0.6125	-0.0686	-0.3088	-0.6272	-0.3373	0.2049	0.1394	0.3726	-0.0219	-0.047	0.3435	0.0013	0.5894	103.301	-12.438	19.826
35	6.7032	0.6064	-5.5154	1.0692	0.4281	8.5044	0.1801	0.1117	0.8769	0.6684	0.3692	-0.0174	-1.06	0.3281	-0.5494	1.4296	-0.2876	-0.2041	0.7193	-0.0876	1.2154	110.311	5.727	32.928
36	9.0196	-0.4198	0.2062	8.8383	-0.5589	5.7752	-0.3977	-0.2575	2.052	0.4784	0.2792	-0.7347	-1.8566	0.3802	0.1184	2.1822	-0.1985	-0.0413	0.9711	-0.082	1.3013	105.711	-3.677	57.802
37	5.311	-1.9668	1.1462	5.763	-0.7321	0.7153	-0.0179	0.3864	0.2011	0.1559	-0.0184	-0.2075	-0.1047	0.116	0.0363	0.3055	-0.0213	-0.0167	0.2876	0.0194	0.084	63.77	-8.567	19.663
38	4.5453	0.2004	-1.5365	1.4894	-2.6328	6.6733	0.1131	-0.0107	0.4984	1.2769	0.2871	0.2397	-1.0099	-0.5559	-0.4002	1.0789	0.0984	-0.0623	0.6099	-0.1202	0.433	53.668	8.317	32.471
39	11.4758	-2.6179	1.0859	9.2549	0.78	5.2885	-0.2471	-0.8391	0.9865	-0.3447	0.0447	0.1562	-1.0681	-0.7955	0.2024	1.674	0.1672	0.0216	1.3169	-0.027	0.4172	57.951	-0.196	57.778
40	6.8504	1.7455	0.5579	3.3663	0.5039	0.5134	-0.2425	0.0994	0.4445	-0.1316	0.1771	0.2943	-0.0677	-0.104	0.0654	0.3175	-0.003	-0.0149	0.289	-0.0072	0.1461	35.891	-36.924	19.813
41	1.118	-3.2692	1.2687	10.1275	-3.7567	8.7243	0.4973	-0.7131	-0.6145	-0.9142	-0.4253	-0.2131	-0.3838	-0.7362	-0.072	0.8106	0.1642	0.0288	0.8847	-0.3774	0.3989	16.758	-33.644	33.001
42	13.226	-0.256	-0.7625	5.8167	0.8756	4.7512	0.766	-0.0662	-0.353	0.605	-1.1123	0.4925	-0.3929	-0.941	0.3463	1.2542	-0.0732	-0.1348	1.4332	-0.0231	0.5955	26.281	-35.818	58.125
43	15.7252	5.3457	-3.1039	8.6749	-2.8512	10.0352	0.284	-1.2222	0.6849	0.6319	-0.1183	0.73	-0.6533	0.1079	-0.1657	1.5896	0.032	0.065	1.4133	-0.2267	0.5898	65.463	-29.105	-97.416
44	9.7677	2.8202	-1.3426	16.3214	-5.1462	10.0453	0.2826	-0.9074	-0.4436	1.1233	0.0486	0.5493	-0.7812	-0.4767	-0.3312	1.3664	0.0593	0.0439	1.4273	-0.0852	0.6719	52.967	-48.344	-97.305
45	11.0967	-5.2005	3.3208	15.4906	-5.2491	13.9972	0.1016	-1.3923	-0.7158	0.948	0.1675	0.4386	-0.0866	-0.2947	-0.2691	1.2601	-0.0395	-0.0265	1.4301	-0.0054	0.609	60.026	-70.304	-97.435
46	16.5083	-0.334	4.8924	7.3948	-0.2708	12.9003	0.1277	-1.3463	-0.7706	0.764	0.2891	-0.3163	0.4261	-0.4489	-0.4167	1.5454	0.0461	0.0406	1.3256	0.1139	0.4796	81.576	-78.285	-97.509
47	13.2474	7.0312	4.9309	11.8672	6.314	12.9743	0.4913	-1.3809	-0.3333	0.8964	-0.3979	-0.9856	0.8541	-0.2297	-0.0933	1.4752	0.1018	-0.0443	1.342	0.2251	0.5833	101.089	-66.448	-97.347
48	7.3528	-2.2871	-1.248	15.2621	4.269	9.9839	0.1113	-0.759	0.3196	1.2462	0.4847	-0.7163	0.3251	0.736	-0.596	1.4984	-0.0193	0.0159	1.5127	0.0201	0.6644	104.191	-43.632	-97.571
49	13.0876	-2.3213	-2.6388	9.4838	2.6121	11.9707	0.0977	-1.0622	1.0404	0.8277	0.2057	-0.2219	0.0484	0.5443	-0.3035	1.3801	-0.0911	-0.0153	1.3412	-0.1048	0.671	88.279	-26.919	-97.657

Refinement TLS group

Refine-ID: X-RAY DIFFRACTION / Selection: ALL

ID	Refine TLS-ID	Auth asym-ID	Label asym-ID	Auth seq-ID	Label seq-ID
1	1	A	A	2 - 135	1 - 134
2	1	A	A	410 - 525	409 - 524
3	1	A	CA - V	600 - 601	1
4	2	A	A	136 - 190	135 - 189
5	2	A	A	375 - 409	374 - 408
6	3	A	A	191 - 374	190 - 373
7	4	B	B	2 - 135	1 - 134
8	4	B	B	410 - 525	409 - 524
9	4	B	DA - W	600 - 601	1
10	5	B	B	136 - 190	135 - 189
11	5	B	B	375 - 409	374 - 408
12	6	B	B	191 - 374	190 - 373
13	7	C	C	2 - 135	1 - 134
14	7	C	C	410 - 525	409 - 524
15	7	C	EA - X	600 - 601	1
16	8	C	C	136 - 190	135 - 189
17	8	C	C	375 - 409	374 - 408
18	9	C	C	191 - 374	190 - 373
19	10	D	D	2 - 135	1 - 134
20	10	D	D	410 - 525	409 - 524
21	10	D	FA - Y	600 - 601	1
22	11	D	D	136 - 190	135 - 189
23	11	D	D	375 - 409	374 - 408
24	12	D	D	191 - 374	190 - 373
25	13	E	E	2 - 135	1 - 134
26	13	E	E	410 - 525	409 - 524
27	13	E	GA - Z	600 - 601	1
28	14	E	E	136 - 190	135 - 189
29	14	E	E	375 - 409	374 - 408
30	15	E	E	191 - 374	190 - 373
31	16	F	F	2 - 135	1 - 134
32	16	F	F	410 - 525	409 - 524
33	16	F	HA - AA	600 - 601	1
34	17	F	F	136 - 190	135 - 189
35	17	F	F	375 - 409	374 - 408
36	18	F	F	191 - 374	190 - 373
37	19	G	G	2 - 135	1 - 134
38	19	G	G	410 - 525	409 - 524
39	19	G	IA - BA	600 - 601	1
40	20	G	G	136 - 190	135 - 189
41	20	G	G	375 - 409	374 - 408
42	21	G	G	191 - 374	190 - 373
43	22	H	H	2 - 135	1 - 134
44	22	H	H	410 - 525	409 - 524
45	23	H	H	136 - 190	135 - 189
46	23	H	H	375 - 409	374 - 408
47	24	H	H	191 - 374	190 - 373
48	25	I	I	2 - 135	1 - 134
49	25	I	I	410 - 525	409 - 524
50	26	I	I	136 - 190	135 - 189
51	26	I	I	375 - 409	374 - 408
52	27	I	I	191 - 374	190 - 373
53	28	J	J	2 - 135	1 - 134
54	28	J	J	410 - 525	409 - 524
55	29	J	J	136 - 190	135 - 189
56	29	J	J	375 - 409	374 - 408
57	30	J	J	191 - 374	190 - 373
58	31	K	K	2 - 135	1 - 134
59	31	K	K	410 - 525	409 - 524
60	32	K	K	136 - 190	135 - 189
61	32	K	K	375 - 409	374 - 408
62	33	K	K	191 - 374	190 - 373
63	34	L	L	2 - 135	1 - 134
64	34	L	L	410 - 525	409 - 524
65	35	L	L	136 - 190	135 - 189
66	35	L	L	375 - 409	374 - 408
67	36	L	L	191 - 374	190 - 373
68	37	M	M	2 - 135	1 - 134
69	37	M	M	410 - 525	409 - 524
70	38	M	M	136 - 190	135 - 189
71	38	M	M	375 - 409	374 - 408
72	39	M	M	191 - 374	190 - 373
73	40	N	N	2 - 135	1 - 134
74	40	N	N	410 - 525	409 - 524
75	41	N	N	136 - 190	135 - 189
76	41	N	N	375 - 409	374 - 408
77	42	N	N	191 - 374	190 - 373
78	43	O	O	1 - 97	1 - 97
79	44	P	P	1 - 97	1 - 97
80	45	Q	Q	1 - 97	1 - 97
81	46	R	R	1 - 97	1 - 97
82	47	S	S	1 - 97	1 - 97
83	48	T	T	1 - 97	1 - 97
84	49	U	U	1 - 97	1 - 97

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

Version 3 of the EMDB header file is now the official format.
The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi

Thousand views of thousand structures

Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

-
Movie

-
Structure viewers

+
Viewer log

-
This page

-
This web site

-
Options

+
Open data

-
Basic information

-
Structure visualization

-
Downloads & links

-
Download

-
Validation report

-
Related structure data

-
Links

-
Assembly

-
Components

-
Experimental details

-
Experiment

-
Sample preparation

-
Data collection

-
Processing

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

-
Aug 12, 2020. Covid-19 info

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi

-Movie

-Structure viewers

+Viewer log

-This page

-This web site

-Options

+Open data

-Basic information

-Structure visualization

-Downloads & links

-Download

-Validation report

-Related structure data

-Links

-Assembly

-Components

-Experimental details

-Experiment

-Sample preparation

-Data collection

-Processing

+About Yorodumi

-News

-Feb 9, 2022. New format data for meta-information of EMDB entries

-Aug 12, 2020. Covid-19 info

+Mar 5, 2020. Novel coronavirus structure data

+Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+Jul 12, 2017. Major update of PDB

-Yorodumi

-
Movie

-
Structure viewers

+
Viewer log

-
This page

-
This web site

-
Options

+
Open data

-
Basic information

-
Structure visualization

-
Downloads & links

-
Download

-
Validation report

-
Related structure data

-
Links

-
Assembly

-
Components

-
Experimental details

-
Experiment

-
Sample preparation

-
Data collection

-
Processing

+
About Yorodumi

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

-
Aug 12, 2020. Covid-19 info

+
Mar 5, 2020. Novel coronavirus structure data

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

+
Jul 12, 2017. Major update of PDB

-
Yorodumi