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- PDB-1stu: DOUBLE STRANDED RNA BINDING DOMAIN -

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Basic information

Entry
Database: PDB / ID: 1stu
TitleDOUBLE STRANDED RNA BINDING DOMAIN
ComponentsMATERNAL EFFECT PROTEIN STAUFEN
KeywordsDOUBLE STRANDED RNA BINDING DOMAIN / STAUFEN
Function / homology
Function and homology information


germ plasm / subsynaptic reticulum / pole plasm RNA localization / bicoid mRNA localization / regulation of oskar mRNA translation / pole plasm protein localization / posterior cell cortex / regulation of pole plasm oskar mRNA localization / asymmetric protein localization involved in cell fate determination / anterograde dendritic transport of messenger ribonucleoprotein complex ...germ plasm / subsynaptic reticulum / pole plasm RNA localization / bicoid mRNA localization / regulation of oskar mRNA translation / pole plasm protein localization / posterior cell cortex / regulation of pole plasm oskar mRNA localization / asymmetric protein localization involved in cell fate determination / anterograde dendritic transport of messenger ribonucleoprotein complex / neuroblast fate determination / positive regulation of cytoplasmic mRNA processing body assembly / pole plasm assembly / positive regulation of synaptic assembly at neuromuscular junction / neuronal ribonucleoprotein granule / RNA localization / basal cortex / anterior/posterior axis specification, embryo / apical cortex / intracellular mRNA localization / protein localization to synapse / oogenesis / lncRNA binding / germ cell development / long-term memory / dendrite cytoplasm / basal plasma membrane / mRNA 3'-UTR binding / P-body / cytoplasmic ribonucleoprotein granule / cytoplasmic stress granule / apical part of cell / double-stranded RNA binding / cell cortex / neuron projection / apical plasma membrane / neuronal cell body / mRNA binding / plasma membrane / cytoplasm
Similarity search - Function
Staufen, C-terminal / : / Staufen C-terminal domain / Double Stranded RNA Binding Domain - #20 / Double-stranded RNA binding motif / Double-stranded RNA binding motif / Double stranded RNA-binding domain (dsRBD) profile. / Double-stranded RNA-binding domain / Double Stranded RNA Binding Domain / 2-Layer Sandwich / Alpha Beta
Similarity search - Domain/homology
Maternal effect protein staufen
Similarity search - Component
Biological speciesDrosophila melanogaster (fruit fly)
MethodSOLUTION NMR
AuthorsBycroft, M.
Citation
Journal: EMBO J. / Year: 1995
Title: NMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5.
Authors: Bycroft, M. / Grunert, S. / Murzin, A.G. / Proctor, M. / St Johnston, D.
#1: Journal: Proc.Natl.Acad.Sci.USA / Year: 1992
Title: A Conserved Double-Stranded RNA-Binding Domain
Authors: Johnston, D.St. / Brown, N.H. / Gall, J.G. / Jantsch, M.
History
DepositionMay 16, 1995Processing site: BNL
Revision 1.0Jul 31, 1995Provider: repository / Type: Initial release
Revision 1.1Mar 3, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Mar 2, 2022Group: Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: MATERNAL EFFECT PROTEIN STAUFEN


Theoretical massNumber of molelcules
Total (without water)7,5711
Polymers7,5711
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)20 / -
Representative

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Components

#1: Protein MATERNAL EFFECT PROTEIN STAUFEN


Mass: 7570.982 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Details: NMR, 20 STRUCTURES / Source: (gene. exp.) Drosophila melanogaster (fruit fly) / Gene: DOUBLE STRANDED RNA BINDING DO / Organ: FRUIT / Plasmid: PGET2T / Gene (production host): DOUBLE STRANDED RNA BINDING DO / Production host: Escherichia coli (E. coli) / References: UniProt: P25159

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

Software
NameVersionClassification
X-PLOR3model building
X-PLOR3refinement
X-PLOR3phasing
NMR softwareName: X-PLOR / Version: 3 / Developer: BRUNGER / Classification: refinement
NMR ensembleConformers submitted total number: 20

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