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Yorodumi- PDB-1skk: Structure of the antimicrobial hexapeptide cyc-(KKWWKF) bound to ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1skk | ||||||
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Title | Structure of the antimicrobial hexapeptide cyc-(KKWWKF) bound to DPC micelles | ||||||
Components | cyclic hexapeptide KKWWKF | ||||||
Keywords | ANTIMICROBIAL PROTEIN / cyclic peptide / antimicrobial peptide | ||||||
Function / homology | CYCLIC HEXAPEPTIDE KKWWKF Function and homology information | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Appelt, C. / Soderhall, J.A. / Bienert, M. / Dathe, M. / Schmieder, P. | ||||||
Citation | Journal: Chembiochem / Year: 2005 Title: Structure of the antimicrobial, cationic hexapeptide cyclo(RRWWRF) and its analogues in solution and bound to detergent micelles. Authors: Appelt, C. / Wessolowski, A. / Soderhall, J.A. / Dathe, M. / Schmieder, P. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1skk.cif.gz | 26.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1skk.ent.gz | 20.1 KB | Display | PDB format |
PDBx/mmJSON format | 1skk.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1skk_validation.pdf.gz | 324.6 KB | Display | wwPDB validaton report |
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Full document | 1skk_full_validation.pdf.gz | 349.1 KB | Display | |
Data in XML | 1skk_validation.xml.gz | 2.1 KB | Display | |
Data in CIF | 1skk_validation.cif.gz | 2.6 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/sk/1skk ftp://data.pdbj.org/pub/pdb/validation_reports/sk/1skk | HTTPS FTP |
-Related structure data
Related structure data | 1qvkC 1qvlC 1skiC 1sklC C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 2.5 mM c-RY; 50 mM D38 dodecyl phosphocholine / Solvent system: 90% H2O/10% D2O |
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Sample conditions | pH: 6.3 / Pressure: ambient / Temperature: 300 K |
-NMR measurement
NMR spectrometer | Type: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 / Details: 168 distance restraints, 5 dihedral restraints | ||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 |