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- PDB-1skl: Structure of the antimicrobial hexapeptide cyc-(RRNalNalRF) bound... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1skl | ||||||
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Title | Structure of the antimicrobial hexapeptide cyc-(RRNalNalRF) bound to DPC micelles | ||||||
![]() | cyclic hexapeptide RR(NAL)(NAL)RF | ||||||
![]() | ANTIMICROBIAL PROTEIN / cyclic peptide / antimicrobial peptide | ||||||
Function / homology | CYCLIC HEXAPEPTIDE RR(NAL)(NAL)RF![]() | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
![]() | Appelt, C. / Soderhall, J.A. / Bienert, M. / Dathe, M. / Schmieder, P. | ||||||
![]() | ![]() Title: Structure of the antimicrobial, cationic hexapeptide cyclo(RRWWRF) and its analogues in solution and bound to detergent micelles. Authors: Appelt, C. / Wessolowski, A. / Soderhall, J.A. / Dathe, M. / Schmieder, P. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 28.6 KB | Display | ![]() |
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PDB format | ![]() | 22.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
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-Validation report
Summary document | ![]() | 334.5 KB | Display | ![]() |
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Full document | ![]() | 358 KB | Display | |
Data in XML | ![]() | 3.6 KB | Display | |
Data in CIF | ![]() | 4.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1qvkC ![]() 1qvlC ![]() 1skiC ![]() 1skkC C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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Sample preparation
Details | Contents: 2.5 mM c-RY, 50 mM D38 dodecyl phosphocholine / Solvent system: 90% H2O/10% D2O |
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Sample conditions | pH: 6.3 / Pressure: ambient / Temperature: 300 K |
-NMR measurement
NMR spectrometer | Type: Bruker DRX / Manufacturer: Bruker / Model: DRX / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 / Details: 103 distance restraints, 2 dihedral restraints | ||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 10 |