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- PDB-1sgt: REFINED CRYSTAL STRUCTURE OF STREPTOMYCES GRISEUS TRYPSIN AT 1.7 ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1sgt | ||||||
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Title | REFINED CRYSTAL STRUCTURE OF STREPTOMYCES GRISEUS TRYPSIN AT 1.7 ANGSTROMS RESOLUTION | ||||||
![]() | TRYPSIN | ||||||
![]() | HYDROLASE (SERINE PROTEINASE) | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Read, R.J. / James, M.N.G. | ||||||
![]() | ![]() Title: Refined crystal structure of Streptomyces griseus trypsin at 1.7 A resolution. Authors: Read, R.J. / James, M.N. #1: ![]() Title: Critical Comparison of Comparative Model Building of Streptomyces Griseus Trypsin Authors: Read, R.J. / Brayer, G.D. / Jurasek, L. / James, M.N.G. | ||||||
History |
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Remark 700 | SHEET SHEETS S1 AND S2 ARE BOTH SIX-STRANDED SHEETS FORMING A BETA-BARREL. THIS IS REPRESENTED ON ...SHEET SHEETS S1 AND S2 ARE BOTH SIX-STRANDED SHEETS FORMING A BETA-BARREL. THIS IS REPRESENTED ON THE SHEET RECORDS BELOW BY A SEVEN-STRANDED SHEET WITH THE FIRST AND LAST STRANDS IDENTICAL. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 54.8 KB | Display | ![]() |
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PDB format | ![]() | 41.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 357.5 KB | Display | ![]() |
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Full document | ![]() | 361 KB | Display | |
Data in XML | ![]() | 6.4 KB | Display | |
Data in CIF | ![]() | 10.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Atom site foot note | 1: THR 20 - POSSIBLE STATIC DISORDER WITH CHI 1 ROTATED BY -120 DEGREES. 2: ARG 21 - POOR DENSITY FOR GUANIDINIUM GROUP. 3: THR 65 - POSSIBLE STATIC DISORDER WITH CHI 1 ROTATED BY +120 DEGREES. 4: LYS 82 - GOOD DENSITY UP TO NZ WHICH IS NOT VISIBLE. / 5: ARG 84 - NOISY DENSITY BEYOND CD. / 6: LYS 87 - VERY WEAK DENSITY BEYOND CD. 7: THR 98 - POSSIBLE STATIC DISORDER WITH CHI 1 ROTATED BY +120 DEGREES. 8: GLN 110 - NOISY SIDE CHAIN DENSITY. / 9: LYS 122 - WEAK DENSITY BEYOND CG. 10: GLN 133 - CHI 3 ANGLE DIFFICULT TO ESTABLISH FROM DENSITY. 11: ARG 145 - NOISY AND AMBIGUOUS SIDE CHAIN DENSITY, PROJECTING INTO SOLVENT. 12: ASN 174 - LITTLE DENSITY FOR OD1 AND ND2. / 13: GLN 192 - DENSITY NOISY AND WEAK BEYOND CB. 14: ASN 204 - NOISY DENSITY, POSSIBLY DUE TO STATIC DISORDER AROUND CHI 1. 15: ASP 205 - VERY WEAK DENSITY FOR CB, NOISY DENSITY FOR CARBOXYL GROUP. 16: SER 236 - POSSIBLE STATIC DISORDER ABOUT CHI 1. 17: ARG 243 - VERY NOISY DENSITY, SIDE CHAIN PAST CG IS ESSENTIALLY ARBITRARY. | ||||||||
Components on special symmetry positions |
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Components
#1: Protein | Mass: 23076.762 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() |
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#2: Chemical | ChemComp-CA / |
#3: Water | ChemComp-HOH / |
Source details | SGT IS PURIFIED FROM PRONASE, A COMMERCIAL PRODUCT OBTAINED FROM THE EXTRACELLULAR CULTURE FILTRATE ...SGT IS PURIFIED FROM PRONASE, A COMMERCIAL |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.4 Å3/Da / Density % sol: 48.67 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 6.2 / Method: microdialysis | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Reflection | *PLUS Highest resolution: 1.7 Å / Num. obs: 24878 / Num. measured all: 25580 |
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Reflection shell | *PLUS |
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Processing
Software | Name: PROLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 1.7→8 Å / σ(I): 0
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Refinement step | Cycle: LAST / Resolution: 1.7→8 Å
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Refine LS restraints |
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Refinement | *PLUS σ(I): 1 / Highest resolution: 1.7 Å / Lowest resolution: 8 Å / Num. reflection obs: 20046 / Rfactor obs: 0.161 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |