sequence The sequence for this protein has not been deposited to any sequence database at the time ...sequence The sequence for this protein has not been deposited to any sequence database at the time of processing this file
Resolution: 3.5→3.62 Å / Redundancy: 1.6 % / Rmerge(I) obs: 0.436 / Mean I/σ(I) obs: 1.38 / Num. unique all: 9414 / Rsym value: 0.436 / % possible all: 52.6
-
Processing
Software
Name
Classification
DENZO
datareduction
SCALEPACK
datascaling
ENVELOPE
modelbuilding
CNS
refinement
REFMAC
refinement
ENVELOPE
phasing
Refinement
Method to determine structure: molecular replacement, NCS averaging Starting model: cryo-electron microscopy reconstruction Resolution: 3.5→20 Å / Isotropic thermal model: individual isotropic / Cross valid method: THROUGHOUT / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber Details: above statistics are for model refined with individual isotropic temparature-factors, followed by TLS refinement using REFMAC, which gave the following displacement parameters (rigid unit is ...Details: above statistics are for model refined with individual isotropic temparature-factors, followed by TLS refinement using REFMAC, which gave the following displacement parameters (rigid unit is the crystal ASU). ORIGIN (0.120 -175.570 -0.120) T (0.0000 0.0000 0.0000 0.0000 0.0000 0.0000) L (0.1990 0.2145 0.2016 0.0769 -0.0807 -0.0731) S (-0.0063 0.0057 0.0213 -0.0161 -0.0188 -0.0151 -0.0390 0.0000)
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.316
1065
-
random
Rwork
0.313
-
-
-
all
0.313
123514
-
-
obs
0.313
104679
62.4 %
-
Displacement parameters
Biso mean: 96.7 Å2
Refine analyze
Free
Obs
Luzzati coordinate error
0.7 Å
0.8 Å
Luzzati d res low
-
5 Å
Luzzati sigma a
1.3 Å
1.6 Å
Refinement step
Cycle: LAST / Resolution: 3.5→20 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
4108
0
0
0
4108
Refine LS restraints
Refine-ID
Type
Dev ideal
X-RAY DIFFRACTION
c_bond_d
0.011307
X-RAY DIFFRACTION
c_angle_deg
1.9
LS refinement shell
Resolution (Å)
Rfactor Rfree
Num. reflection Rfree
Rfactor Rwork
Refine-ID
Num. reflection obs
% reflection obs (%)
3.5-3.65
0.475
109
0.521
X-RAY DIFFRACTION
9937
53
3.65-4.08
0.425
231
0.458
X-RAY DIFFRACTION
21064
56
4.08-4.71
0.324
235
0.343
X-RAY DIFFRACTION
23706
61
4.71-5.77
0.31
237
0.297
X-RAY DIFFRACTION
22276
66
5.77-8.16
0.215
176
0.207
X-RAY DIFFRACTION
18558
71
8.16-20
0.284
77
0.245
X-RAY DIFFRACTION
9129
68
+
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