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Open data
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Basic information
Entry | Database: PDB / ID: 1rvi | ||||||||||||||||||
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Title | SOLUTION STRUCTURE OF THE DNA DODECAMER CGTTTTAAAACG | ||||||||||||||||||
![]() | 5'-D(*![]() DNA / DOUBLE HELIX | Function / homology | DNA / DNA (> 10) | ![]() Method | SOLUTION NMR / simulated annealing, for details see (Padrta et al. (2002) J. Biomol. NMR 24, 1-24) | ![]() Stefl, R. / Wu, H. / Ravindranathan, S. / Sklenar, V. / Feigon, J. | ![]() ![]() Title: DNA A-tract bending in three dimensions: Solving the dA4T4 vs. dT4A4 conundrum. Authors: Stefl, R. / Wu, H. / Ravindranathan, S. / Sklenar, V. / Feigon, J. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 143.2 KB | Display | ![]() |
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PDB format | ![]() | 114.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 312.7 KB | Display | ![]() |
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Full document | ![]() | 372.9 KB | Display | |
Data in XML | ![]() | 6.1 KB | Display | |
Data in CIF | ![]() | 10 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 3661.416 Da / Num. of mol.: 2 / Source method: obtained synthetically |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: THIS STRUCTURE WAS DETERMINED USING RESIDUAL DIPOLAR COUPLINGS |
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Sample preparation
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Sample conditions | Ionic strength: 25 mM NH4Cl / pH: 6.0 / Pressure: ambient / Temperature: 288 K | |||||||||
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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Processing
NMR software | Name: ![]() |
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Refinement | Method: simulated annealing, for details see (Padrta et al. (2002) J. Biomol. NMR 24, 1-24) Software ordinal: 1 Details: the structures are based on a total of 833 restraints, 549 are NOE-derived distance restraints, 160 torsion angle restraints, 24 pseudorotation phase angle restraints, 24 distance restraints ...Details: the structures are based on a total of 833 restraints, 549 are NOE-derived distance restraints, 160 torsion angle restraints, 24 pseudorotation phase angle restraints, 24 distance restraints from W-C hydrogen bonds, and 72 residual dipolar couplings. |
NMR representative | Selection criteria: lowest energy |
NMR ensemble | Conformer selection criteria: structures with the least restraint violations, structures with the lowest energy Conformers calculated total number: 30 / Conformers submitted total number: 9 |