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Yorodumi- PDB-1rf8: Solution structure of the yeast translation initiation factor eIF... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1rf8 | |||||||||
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Title | Solution structure of the yeast translation initiation factor eIF4E in complex with m7GDP and eIF4GI residues 393 to 490 | |||||||||
Components |
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Keywords | BIOSYNTHETIC PROTEIN / TRANSLATION / Initiation factor / Protein biosynthesis / Translation regulation | |||||||||
Function / homology | Function and homology information Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S / positive regulation of formation of translation preinitiation complex / regulation of protein metabolic process / eukaryotic translation initiation factor 4F complex / mRNA cap binding / RNA 7-methylguanosine cap binding / phosphatidylinositol-3-phosphate binding / positive regulation of endoplasmic reticulum unfolded protein response / mTORC1-mediated signalling / regulation of translational initiation ...Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S / positive regulation of formation of translation preinitiation complex / regulation of protein metabolic process / eukaryotic translation initiation factor 4F complex / mRNA cap binding / RNA 7-methylguanosine cap binding / phosphatidylinositol-3-phosphate binding / positive regulation of endoplasmic reticulum unfolded protein response / mTORC1-mediated signalling / regulation of translational initiation / nuclear-transcribed mRNA catabolic process, nonsense-mediated decay / Translation initiation complex formation / Ribosomal scanning and start codon recognition / ATPase activator activity / Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC) / Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC) / L13a-mediated translational silencing of Ceruloplasmin expression / stress granule assembly / ribosomal large subunit biogenesis / translational initiation / molecular condensate scaffold activity / translation initiation factor activity / P-body / cytoplasmic stress granule / : / regulation of cell cycle / ribosome / mRNA binding / mitochondrion / RNA binding / nucleus / cytoplasm Similarity search - Function | |||||||||
Biological species | Saccharomyces cerevisiae (brewer's yeast) | |||||||||
Method | SOLUTION NMR | |||||||||
Authors | Gross, J.D. / Moerke, N.J. / von der Haar, T. / Lugovskoy, A.A. / Sachs, A.B. / McCarthy, J.E.G. / Wagner, G. | |||||||||
Citation | Journal: Cell(Cambridge,Mass.) / Year: 2003 Title: Ribosome loading onto the mRNA cap is driven by conformational coupling between eIF4G and eIF4E. Authors: Gross, J.D. / Moerke, N.J. / von der Haar, T. / Lugovskoy, A.A. / Sachs, A.B. / McCarthy, J.E. / Wagner, G. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1rf8.cif.gz | 1.1 MB | Display | PDBx/mmCIF format |
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PDB format | pdb1rf8.ent.gz | 910.5 KB | Display | PDB format |
PDBx/mmJSON format | 1rf8.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/rf/1rf8 ftp://data.pdbj.org/pub/pdb/validation_reports/rf/1rf8 | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 24211.230 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Saccharomyces cerevisiae (brewer's yeast) Gene: TIF45, CDC33, YOL139C / Plasmid: PET30a / Cell line (production host): BL21(DE3) / Production host: Escherichia coli (E. coli) / References: UniProt: P07260 | ||
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#2: Protein | Mass: 11087.355 Da / Num. of mol.: 1 / Fragment: residues 391-488 (SWS:P39935) Source method: isolated from a genetically manipulated source Source: (gene. exp.) Saccharomyces cerevisiae (brewer's yeast) Gene: TIF4631, YGR162W / Plasmid: pGEX-2T / Cell line (production host): BL21 / Production host: Escherichia coli (E. coli) / References: UniProt: P39935 | ||
#3: Chemical | ChemComp-MTN / #4: Chemical | ChemComp-M7G / | |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Details | Contents: 0.6 mM 1:1:1 m7GDP/eIF4E/eIF4G(393-490) complex Solvent system: 50 mM Sodium Phosphate 50 mM KCl 12 mM CHAPS |
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Sample conditions | pH: 6.5 / Pressure: ambient / Temperature: 298 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation wavelength | Relative weight: 1 | ||||||||||||||||||||
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NMR spectrometer |
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-Processing
NMR software |
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NMR ensemble | Conformer selection criteria: structures with the least restraint violations Conformers calculated total number: 50 / Conformers submitted total number: 11 |