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Yorodumi- PDB-1rec: THREE-DIMENSIONAL STRUCTURE OF RECOVERIN, A CALCIUM SENSOR IN VISION -
+Open data
-Basic information
Entry | Database: PDB / ID: 1rec | ||||||
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Title | THREE-DIMENSIONAL STRUCTURE OF RECOVERIN, A CALCIUM SENSOR IN VISION | ||||||
Components | RECOVERIN | ||||||
Keywords | CALCIUM-BINDING PROTEIN | ||||||
Function / homology | Function and homology information Inactivation, recovery and regulation of the phototransduction cascade / regulation of calcium ion transport / phototransduction / photoreceptor outer segment / visual perception / photoreceptor inner segment / perikaryon / calcium ion binding / membrane / cytosol Similarity search - Function | ||||||
Biological species | Bos taurus (cattle) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.9 Å | ||||||
Authors | Flaherty, K.M. / Zozulya, S. / Stryer, L. / Mckay, D.B. | ||||||
Citation | Journal: Cell(Cambridge,Mass.) / Year: 1993 Title: Three-Dimensional Structure of Recoverin, a Calcium Sensor in Vision Authors: Flaherty, K.M. / Zozulya, S. / Stryer, L. / McKay, D.B. #1: Journal: Proc.Natl.Acad.Sci.USA / Year: 1992 Title: Cloning, Expression, and Crystallization of Recoverin, a Calcium Sensor in Vision Authors: Ray, S. / Zozulya, S. / Niemi, G.A. / Flaherty, K.M. / Brolley, D. / Dizhoor, A.M. / Mckay, D.B. / Hurley, J. / Stryer, L. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1rec.cif.gz | 53.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1rec.ent.gz | 38.2 KB | Display | PDB format |
PDBx/mmJSON format | 1rec.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/re/1rec ftp://data.pdbj.org/pub/pdb/validation_reports/re/1rec | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 23235.209 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Bos taurus (cattle) / References: UniProt: P21457 |
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#2: Chemical | ChemComp-CA / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.34 Å3/Da / Density % sol: 47.37 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 8 / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.9 Å / Rmerge(I) obs: 0.078 |
-Processing
Software |
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Refinement | Rfactor Rwork: 0.191 / Rfactor obs: 0.191 / Highest resolution: 1.9 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.9 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 1.9 Å / Lowest resolution: 8 Å / Num. reflection obs: 15428 / σ(I): 2 / Rfactor obs: 0.191 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: x_angle_d / Dev ideal: 1.46 |