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Yorodumi- PDB-1qp2: SOLUTION STRUCTURE OF PHOTOSYSTEM I ACCESSORY PROTEIN E FROM THE ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1qp2 | ||||||
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Title | SOLUTION STRUCTURE OF PHOTOSYSTEM I ACCESSORY PROTEIN E FROM THE CYANOBACTERIUM NOSTOC SP. STRAIN PCC 8009 | ||||||
Components | PROTEIN (PSAE PROTEIN) | ||||||
Keywords | ELECTRON TRANSPORT / MAINLY BETA / ROLL / PLECKSTRIN TOPOLOGY / SH3-LIKE | ||||||
Function / homology | Function and homology information photosystem I reaction center / plasma membrane-derived thylakoid membrane / photosynthesis Similarity search - Function | ||||||
Biological species | Nostoc sp. (bacteria) | ||||||
Method | SOLUTION NMR / distance geometry simulated annealing, molecular dynamics | ||||||
Model type details | minimized average | ||||||
Authors | Mayer, K.L. / Shen, G. / Bryant, D.A. / Lecomte, J.T.J. / Falzone, C.J. | ||||||
Citation | Journal: Biochemistry / Year: 1999 Title: The solution structure of photosystem I accessory protein E from the cyanobacterium Nostoc sp. strain PCC 8009. Authors: Mayer, K.L. / Shen, G. / Bryant, D.A. / Lecomte, J.T. / Falzone, C.J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1qp2.cif.gz | 31.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1qp2.ent.gz | 24 KB | Display | PDB format |
PDBx/mmJSON format | 1qp2.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/qp/1qp2 ftp://data.pdbj.org/pub/pdb/validation_reports/qp/1qp2 | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 7969.069 Da / Num. of mol.: 1 / Fragment: FULL LENGTH / Mutation: WILD-TYPE Source method: isolated from a genetically manipulated source Source: (gene. exp.) Nostoc sp. (bacteria) / Strain: PCC 8009 / Plasmid: PET3D / Production host: Escherichia coli (E. coli) / References: UniProt: Q9WWP1 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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NMR details | Text: The structure was determined using triple-resonance NMR spectroscopy. |
-Sample preparation
Crystal | Description: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY. |
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Details | Contents: NO BUFFER OR ADDED SALT |
Sample conditions | Ionic strength: NO BUFFER OR ADDED SALT / pH: 6.1 / Pressure: ambient / Temperature: 298 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Bruker AMX2 / Manufacturer: Bruker / Model: AMX2 / Field strength: 500 MHz |
-Processing
Software |
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NMR software |
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Refinement | Method: distance geometry simulated annealing, molecular dynamics Software ordinal: 1 Details: 966 distance restraints 73 dihedral angle restraints 54 distance retraints from hydrogen bonds | ||||||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 1 |