+Open data
-Basic information
Entry | Database: PDB / ID: 1qfa | ||||||
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Title | STRUCTURE OF A NEUROPEPTIDE Y Y2 AGONIST | ||||||
Components | PROTEIN (NEUROPEPTIDE Y) | ||||||
Keywords | HORMONE/GROWTH FACTOR / NEUROPEPTIDE Y / AGONIST / HELIX / HORMONE-GROWTH FACTOR COMPLEX | ||||||
Function / homology | Function and homology information synaptic signaling via neuropeptide / neuropeptide Y receptor binding / intestinal epithelial cell differentiation / positive regulation of appetite / adult feeding behavior / neuropeptide hormone activity / feeding behavior / central nervous system neuron development / neuronal dense core vesicle / G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger ...synaptic signaling via neuropeptide / neuropeptide Y receptor binding / intestinal epithelial cell differentiation / positive regulation of appetite / adult feeding behavior / neuropeptide hormone activity / feeding behavior / central nervous system neuron development / neuronal dense core vesicle / G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger / calcium channel regulator activity / neuropeptide signaling pathway / GABA-ergic synapse / FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes / Peptide ligand-binding receptors / G protein-coupled receptor activity / cerebral cortex development / regulation of blood pressure / neuron projection development / G alpha (i) signalling events / chemical synaptic transmission / signaling receptor binding / Golgi apparatus / extracellular space / extracellular region Similarity search - Function | ||||||
Method | SOLUTION NMR / distance geometry | ||||||
Authors | Barnham, K.J. / Catalfamo, F. / Pallaghy, P.K. / Howlett, G.J. / Norton, R.S. | ||||||
Citation | Journal: Biochim.Biophys.Acta / Year: 1999 Title: Helical structure and self-association in a 13 residue neuropeptide Y Y2 receptor agonist: relationship to biological activity. Authors: Barnham, K.J. / Catalfamo, F. / Pallaghy, P.K. / Howlett, G.J. / Norton, R.S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1qfa.cif.gz | 93.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1qfa.ent.gz | 64.6 KB | Display | PDB format |
PDBx/mmJSON format | 1qfa.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/qf/1qfa ftp://data.pdbj.org/pub/pdb/validation_reports/qf/1qfa | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 1774.103 Da / Num. of mol.: 1 / Fragment: NPY Y2 RECEPTOR AGONIST / Mutation: I28L, I31L / Source method: obtained synthetically Details: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THIS PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN). References: UniProt: P01303 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 40% TFE-D3,60% WATER |
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Sample conditions | pH: 3.6 / Pressure: 1 atm / Temperature: 293 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Bruker DRX600 / Manufacturer: Bruker / Model: DRX600 / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: distance geometry / Software ordinal: 1 | ||||||||||||||||
NMR ensemble | Conformer selection criteria: LOWEST STEREOCHEMICAL AND NOE ENERGIES Conformers calculated total number: 1000 / Conformers submitted total number: 20 |