D: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') E: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') F: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') A: PROTEIN (DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE (ADAR1)) B: PROTEIN (DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE (ADAR1)) C: PROTEIN (DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE (ADAR1))
D: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') E: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3') A: PROTEIN (DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE (ADAR1)) B: PROTEIN (DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE (ADAR1))
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray
Radiation wavelength
Wavelength: 1.5418 Å / Relative weight: 1
Reflection
Resolution: 2.1→20 Å / Num. obs: 29702 / % possible obs: 99.9 % / Observed criterion σ(I): 0 / Redundancy: 9.8 % / Rsym value: 0.074 / Net I/σ(I): 27.3
Reflection shell
Resolution: 2.1→2.18 Å / Redundancy: 2.9 % / Mean I/σ(I) obs: 2 / Rsym value: 0.535 / % possible all: 99.3
Reflection
*PLUS
Rmerge(I) obs: 0.074
Reflection shell
*PLUS
% possible obs: 99.3 % / Rmerge(I) obs: 0.535
-
Processing
Software
Name
Version
Classification
SOLVE
phasing
X-PLOR
3.851
refinement
DENZO
datareduction
SCALEPACK
datascaling
Refinement
Method to determine structure: SIRAS / Resolution: 2.1→6 Å / Data cutoff high absF: 100000 / Data cutoff low absF: 0.001 / Cross valid method: THROUGHOUT / σ(F): 0
Rfactor
Num. reflection
% reflection
Selection details
Rfree
0.265
1521
10 %
RANDOM
Rwork
0.227
-
-
-
obs
0.227
13519
99.8 %
-
Displacement parameters
Biso mean: 29.05 Å2
Refinement step
Cycle: LAST / Resolution: 2.1→6 Å
Protein
Nucleic acid
Ligand
Solvent
Total
Num. atoms
1529
369
0
244
2142
Refine LS restraints
Refine-ID
Type
Dev ideal
X-RAY DIFFRACTION
x_bond_d
0.006
X-RAY DIFFRACTION
x_bond_d_na
X-RAY DIFFRACTION
x_bond_d_prot
X-RAY DIFFRACTION
x_angle_d
X-RAY DIFFRACTION
x_angle_d_na
X-RAY DIFFRACTION
x_angle_d_prot
X-RAY DIFFRACTION
x_angle_deg
1.04
X-RAY DIFFRACTION
x_angle_deg_na
X-RAY DIFFRACTION
x_angle_deg_prot
X-RAY DIFFRACTION
x_dihedral_angle_d
24.06
X-RAY DIFFRACTION
x_dihedral_angle_d_na
X-RAY DIFFRACTION
x_dihedral_angle_d_prot
X-RAY DIFFRACTION
x_improper_angle_d
1.08
X-RAY DIFFRACTION
x_improper_angle_d_na
X-RAY DIFFRACTION
x_improper_angle_d_prot
X-RAY DIFFRACTION
x_mcbond_it
X-RAY DIFFRACTION
x_mcangle_it
X-RAY DIFFRACTION
x_scbond_it
X-RAY DIFFRACTION
x_scangle_it
LS refinement shell
Resolution: 2.1→2.19 Å / Total num. of bins used: 8
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