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- PDB-1pfc: MOLECULAR-REPLACEMENT STRUCTURE OF GUINEA PIG IGG1 P*FC(PRIME) RE... -

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Basic information

Entry
Database: PDB / ID: 1pfc
TitleMOLECULAR-REPLACEMENT STRUCTURE OF GUINEA PIG IGG1 P*FC(PRIME) REFINED AT 3.1 ANGSTROMS RESOLUTION
ComponentsIGG1 PFC' FC
KeywordsIMMUNOGLOBULIN
Function / homologyImmunoglobulins / Immunoglobulin-like / Sandwich / Mainly Beta
Function and homology information
Biological speciesCavia porcellus (domestic guinea pig)
MethodX-RAY DIFFRACTION / Resolution: 3.125 Å
AuthorsBryant, S.H. / Amzel, L.M. / Poljak, R.J. / Phizackerley, R.P.
Citation
Journal: Acta Crystallogr.,Sect.B / Year: 1985
Title: Molecular-Replacement Structure of Guinea Pig Igg1 Pfc(Prime) Refined at 3.1 Angstroms Resolution
Authors: Bryant, S.H. / Amzel, L.M. / Phizackerley, R.P. / Poljak, R.J.
#1: Journal: Thesis, Johns Hopkins University / Year: 1981
Title: Crystallographic Refinement of Guinea Pig Iggi Pfc(Prime) Fragment at 3.125 Angstroms
Authors: Bryant, S.H.
#2: Journal: Mol.Immunol. / Year: 1979
Title: Three Dimensional Structure of the P/Fc(Prime) Fragment of Guinea Pig Igg1
Authors: Phizackerley, R.P. / Wishner, B.C. / Bryant, S.H. / Amzel, L.M. / Lopez Decastro, J.A. / Poljak, R.J.
History
DepositionOct 28, 1981Processing site: BNL
Revision 1.0Feb 3, 1982Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Jun 5, 2024Group: Data collection / Database references / Other
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / pdbx_database_status
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: IGG1 PFC' FC


Theoretical massNumber of molelcules
Total (without water)12,6901
Polymers12,6901
Non-polymers00
Water00
1
A: IGG1 PFC' FC

A: IGG1 PFC' FC


Theoretical massNumber of molelcules
Total (without water)25,3812
Polymers25,3812
Non-polymers00
Water0
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
crystal symmetry operation2_655-x+1,-y,z1
Unit cell
Length a, b, c (Å)60.570, 60.570, 136.540
Angle α, β, γ (deg.)90.00, 90.00, 90.00
Int Tables number97
Space group name H-MI422

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Components

#1: Protein IGG1 PFC' FC


Mass: 12690.335 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Cavia porcellus (domestic guinea pig)

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION

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Sample preparation

CrystalDensity Matthews: 2.46 Å3/Da / Density % sol: 50.1 %
Crystal grow
*PLUS
Method: unknown

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Data collection

RadiationScattering type: x-ray
Radiation wavelengthRelative weight: 1

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Processing

RefinementResolution: 3.125→5 Å / Rfactor Rwork: 0.303
Refinement stepCycle: LAST / Resolution: 3.125→5 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms878 0 0 0 878
Refinement
*PLUS
Rfactor obs: 0.303
Solvent computation
*PLUS
Displacement parameters
*PLUS

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