[English] 日本語
![](img/lk-miru.gif)
- PDB-1pea: AMIDE RECEPTOR/NEGATIVE REGULATOR OF THE AMIDASE OPERON OF PSEUDO... -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1pea | ||||||
---|---|---|---|---|---|---|---|
Title | AMIDE RECEPTOR/NEGATIVE REGULATOR OF THE AMIDASE OPERON OF PSEUDOMONAS AERUGINOSA (AMIC) COMPLEXED WITH ACETAMIDE | ||||||
![]() | AMIDASE OPERON | ||||||
![]() | BINDING PROTEIN / GENE REGULATOR / RECEPTOR | ||||||
Function / homology | ![]() amide binding / regulation of amide catabolic process / amino acid transport / kinase activity / phosphorylation Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Pearl, L.H. / O'Hara, B.P. | ||||||
![]() | ![]() Title: Crystal structure of AmiC: the controller of transcription antitermination in the amidase operon of Pseudomonas aeruginosa. Authors: Pearl, L. / O'Hara, B. / Drew, R. / Wilson, S. #1: ![]() Title: Crystallization and Preliminary X-Ray Data for the Negative Regulator (Amic) of the Amidase Operon of Pseudomonas Aeruginosa Authors: Wilson, S.A. / Chayen, N.E. / Hemmings, A.M. / Drew, R.E. / Pearl, L.H. #2: ![]() Title: Antitermination of Amidase Expression in Pseudomonas Aeruginosa is Controlled by a Novel Cytoplasmic Amide-Binding Protein Authors: Wilson, S.A. / Wachira, S.J. / Drew, R.E. / Jones, D. / Pearl, L.H. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 84.8 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 65.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 380.7 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 391.2 KB | Display | |
Data in XML | ![]() | 9.7 KB | Display | |
Data in CIF | ![]() | 14.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 | ![]()
| ||||||||
Unit cell |
|
-
Components
#1: Protein | Mass: 42960.031 Da / Num. of mol.: 1 / Fragment: AMIDE RECEPTOR/NEGATIVE REGULATOR Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
---|---|
#2: Chemical | ChemComp-ACM / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.11 Å3/Da / Density % sol: 41.65 % | |||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Crystal | *PLUS Density % sol: 43 % | |||||||||||||||||||||||||
Crystal grow | *PLUS pH: 8 / Method: vapor diffusion / Details: macro-seeding | |||||||||||||||||||||||||
Components of the solutions | *PLUS
|
-Data collection
Diffraction source | Source: ![]() ![]() ![]() |
---|---|
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.882 Å / Relative weight: 1 |
Reflection | Resolution: 2.1→8 Å / Num. obs: 21687 / % possible obs: 96 % / Redundancy: 4.4 % / Rmerge(I) obs: 0.064 |
Reflection | *PLUS Rmerge(I) obs: 0.101 |
-
Processing
Software |
| ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Resolution: 2.1→8 Å / σ(F): 0
| ||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.1→8 Å
| ||||||||||||||||
Software | *PLUS Name: ![]() | ||||||||||||||||
Refinement | *PLUS | ||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||
Refine LS restraints | *PLUS
|