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Open data
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Basic information
Entry | Database: PDB / ID: 1pag | ||||||
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Title | THE 2.5 ANGSTROMS STRUCTURE OF POKEWEED ANTIVIRAL PROTEIN | ||||||
![]() | POKEWEED ANTIVIRAL PROTEIN | ||||||
![]() | PROTEIN SYNTHESIS INHIBITOR | ||||||
Function / homology | ![]() rRNA N-glycosylase / rRNA N-glycosylase activity / toxin activity / defense response to virus / negative regulation of translation Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Monzingo, A.F. / Collins, E.J. / Ernst, S.R. / Irvin, J.D. / Robertus, J.D. | ||||||
![]() | ![]() Title: The 2.5 A structure of pokeweed antiviral protein. Authors: Monzingo, A.F. / Collins, E.J. / Ernst, S.R. / Irvin, J.D. / Robertus, J.D. #1: ![]() Title: Preliminary X-Ray Diffraction Studies on an Anti-Viral Protein Authors: Robertus, J.D. / Monzingo, A.F. / Irvin, J.D. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 110.9 KB | Display | ![]() |
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PDB format | ![]() | 85.8 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 1022.8 KB | Display | ![]() |
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Full document | ![]() | 1 MB | Display | |
Data in XML | ![]() | 23.6 KB | Display | |
Data in CIF | ![]() | 31.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Atom site foot note | 1: RESIDUES PRO A 47 AND PRO B 47 ARE CIS PROLINES. | ||||||||
Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (0.999686, 0.023567, 0.008488), Vector: |
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Components
#1: Protein | Mass: 29341.467 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() References: UniProt: P10297 #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.26 Å3/Da / Density % sol: 45.6 % | ||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 7.4 / Method: batch methodDetails: Robertus, J.D., (1977) Biochem.Biophys.Res.Comm., 74, 775. | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
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Processing
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Refinement | Rfactor Rwork: 0.2 / Rfactor obs: 0.2 / Highest resolution: 2.8 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2.8 Å
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Refine LS restraints |
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