+Open data
-Basic information
Entry | Database: PDB / ID: 1owx | ||||||
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Title | Solution structure of the C-terminal RRM of human La (La225-334) | ||||||
Components | Lupus La protein | ||||||
Keywords | TRANSCRIPTION / RRM | ||||||
Function / homology | Function and homology information nuclear histone mRNA catabolic process / histone mRNA metabolic process / tRNA 3'-end processing / protein localization to cytoplasmic stress granule / IRES-dependent viral translational initiation / RNA Polymerase III Transcription Termination / tRNA export from nucleus / tRNA modification / RNA Polymerase III Abortive And Retractive Initiation / tRNA 5'-leader removal ...nuclear histone mRNA catabolic process / histone mRNA metabolic process / tRNA 3'-end processing / protein localization to cytoplasmic stress granule / IRES-dependent viral translational initiation / RNA Polymerase III Transcription Termination / tRNA export from nucleus / tRNA modification / RNA Polymerase III Abortive And Retractive Initiation / tRNA 5'-leader removal / sequence-specific mRNA binding / poly(U) RNA binding / tRNA processing / positive regulation of translation / cytoplasmic stress granule / tRNA binding / chromosome, telomeric region / ribonucleoprotein complex / mRNA binding / RNA binding / nucleus / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | SOLUTION NMR / torsion angle dynamics | ||||||
Authors | Jacks, A. / Babon, J. / Kelly, G. / Manolaridis, I. / Cary, P.D. / Curry, S. / Conte, M.R. | ||||||
Citation | Journal: Structure / Year: 2003 Title: Structure of the C-terminal domain of human La protein reveals a novel RNA recognition motif coupled to a helical nuclear retention element Authors: Jacks, A. / Babon, J. / Kelly, G. / Manolaridis, I. / Cary, P.D. / Curry, S. / Conte, M.R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1owx.cif.gz | 706.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1owx.ent.gz | 613.1 KB | Display | PDB format |
PDBx/mmJSON format | 1owx.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ow/1owx ftp://data.pdbj.org/pub/pdb/validation_reports/ow/1owx | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 13951.842 Da / Num. of mol.: 1 / Fragment: C-terminal RRM Source method: isolated from a genetically manipulated source Source: (gene. exp.) Homo sapiens (human) / Gene: SSB / Plasmid: pQE9 / Production host: Escherichia coli (E. coli) / Strain (production host): M15 / References: UniProt: P05455 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 0.7 mM La U-15N,13C; 20mM Tris; 100 mM KCl, 1mM DTT, 90% H2O, 10% D2O Solvent system: 90% H2O/10% D2O |
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Sample conditions | Ionic strength: 100 mM KCl / pH: 7 / Pressure: ambient / Temperature: 300 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 | ||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structure with the lowest energy Conformers calculated total number: 60 / Conformers submitted total number: 20 |