+
Open data
-
Basic information
Entry | Database: PDB / ID: 1ocp | ||||||
---|---|---|---|---|---|---|---|
Title | SOLUTION STRUCTURE OF OCT3 POU-HOMEODOMAIN | ||||||
![]() | OCT-3 | ||||||
![]() | DNA BINDING PROTEIN / DNA-BINDING PROTEIN | ||||||
Function / homology | ![]() ectodermal cell fate commitment / response to benzoic acid / mesodermal cell fate commitment / HMG box domain binding / trophectodermal cell fate commitment / blastocyst growth / regulation of asymmetric cell division / endodermal cell fate specification / endodermal cell fate commitment / germ-line stem cell population maintenance ...ectodermal cell fate commitment / response to benzoic acid / mesodermal cell fate commitment / HMG box domain binding / trophectodermal cell fate commitment / blastocyst growth / regulation of asymmetric cell division / endodermal cell fate specification / endodermal cell fate commitment / germ-line stem cell population maintenance / POU domain binding / negative regulation of calcium ion-dependent exocytosis / trophectodermal cell differentiation / female germ cell nucleus / germ cell nucleus / RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding / stem cell population maintenance / cytokine binding / somatic stem cell population maintenance / negative regulation of cell differentiation / blastocyst development / positive regulation of transcription initiation by RNA polymerase II / cell fate commitment / cis-regulatory region sequence-specific DNA binding / response to retinoic acid / transcription repressor complex / : / male germ cell nucleus / cellular response to leukemia inhibitory factor / stem cell differentiation / lysine-acetylated histone binding / chromatin DNA binding / gene expression / DNA-binding transcription activator activity, RNA polymerase II-specific / DNA-binding transcription factor binding / RNA polymerase II-specific DNA-binding transcription factor binding / transcription regulator complex / sequence-specific DNA binding / transcription by RNA polymerase II / transcription cis-regulatory region binding / DNA-binding transcription factor activity, RNA polymerase II-specific / RNA polymerase II cis-regulatory region sequence-specific DNA binding / DNA-binding transcription factor activity / negative regulation of gene expression / negative regulation of DNA-templated transcription / ubiquitin protein ligase binding / chromatin binding / positive regulation of gene expression / regulation of DNA-templated transcription / chromatin / nucleolus / regulation of transcription by RNA polymerase II / positive regulation of DNA-templated transcription / negative regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / DNA binding / nucleoplasm / nucleus / cytoplasm Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | SOLUTION NMR | ||||||
![]() | Morita, E.H. / Hayashi, F. / Shirakawa, M. / Kyogoku, Y. | ||||||
![]() | ![]() Title: Structure of the Oct-3 POU-Homeodomain in Solution, as Determined by Triple Resonance Heteronuclear Multidimensional NMR Spectroscopy Authors: Morita, E.H. / Shirakawa, M. / Hayashi, F. / Imagawa, M. / Kyogoku, Y. #1: ![]() Title: Secondary Structure of the Oct-3 POU Homeodomain as Determined by 1H-15N NMR Spectroscopy Authors: Morita, E.H. / Shirakawa, M. / Hayashi, F. / Imagawa, K. / Kyogoku, Y. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 452.7 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 378.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 344.8 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 490.3 KB | Display | |
Data in XML | ![]() | 27.9 KB | Display | |
Data in CIF | ![]() | 44.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
---|
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-
Components
#1: Protein | Mass: 8029.471 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Gene (production host): T7 GENE 1 UNDER CONTROL OF THE LAC UV5 PROMOTER Production host: ![]() ![]() |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
---|
-
Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
---|
-
Processing
Software |
| ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR software | Name: ![]() | ||||||||||||
NMR ensemble | Conformers submitted total number: 20 |