+Open data
-Basic information
Entry | Database: PDB / ID: 1nlr | ||||||
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Title | ENDO-1,4-BETA-GLUCANASE CELB2, CELLULASE, NATIVE STRUCTURE | ||||||
Components | ENDO-1,4-BETA-GLUCANASE | ||||||
Keywords | ENDOGLUCANASE / GLYCOSYL HYDROLASE / FAMILY 12 / CELB2 | ||||||
Function / homology | Function and homology information polysaccharide binding / cellulase activity / polysaccharide catabolic process Similarity search - Function | ||||||
Biological species | Streptomyces lividans (bacteria) | ||||||
Method | X-RAY DIFFRACTION / MIR / Resolution: 1.75 Å | ||||||
Authors | Sulzenbacher, G. / Dupont, C. / Davies, G.J. | ||||||
Citation | Journal: Biochemistry / Year: 1997 Title: The Streptomyces lividans family 12 endoglucanase: construction of the catalytic cre, expression, and X-ray structure at 1.75 A resolution. Authors: Sulzenbacher, G. / Shareck, F. / Morosoli, R. / Dupont, C. / Davies, G.J. #1: Journal: Nature / Year: 1997 Title: Erratum. Structure of the Inhibitory Receptor for Human Natural Killer Cells Resembles Haematopoietic Receptors Authors: Fan, Q.R. / Mosyak, L. / Winter, C.C. / Wagtmann, N. / Long, E.O. / Wiley, D.C. #2: Journal: Appl.Environ.Microbiol. / Year: 1994 Title: Purification and Characterization of the Celb Endoglucanase from Streptomyces Lividans 66 and DNA Sequence of the Encoding Gene Authors: Wittmann, S. / Shareck, F. / Kluepfel, D. / Morosoli, R. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1nlr.cif.gz | 56.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1nlr.ent.gz | 43.8 KB | Display | PDB format |
PDBx/mmJSON format | 1nlr.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1nlr_validation.pdf.gz | 414.3 KB | Display | wwPDB validaton report |
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Full document | 1nlr_full_validation.pdf.gz | 415.4 KB | Display | |
Data in XML | 1nlr_validation.xml.gz | 12.7 KB | Display | |
Data in CIF | 1nlr_validation.cif.gz | 18.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/nl/1nlr ftp://data.pdbj.org/pub/pdb/validation_reports/nl/1nlr | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 24594.713 Da / Num. of mol.: 1 / Fragment: CATALYTIC DOMAIN Source method: isolated from a genetically manipulated source Source: (gene. exp.) Streptomyces lividans (bacteria) / Fragment: CATALYTIC DOMAIN / Production host: Streptomyces lividans (bacteria) / Strain (production host): 66 / References: UniProt: Q54331, cellulase |
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#2: Water | ChemComp-HOH / |
Compound details | THE COORDINATES GIVEN DEFINE THE STRUCTURE OF CELB2, THE TRUNCATED, CATALYTICALLY COMPETENT, FORM ...THE COORDINATE |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.01 Å3/Da / Density % sol: 38.2 % | ||||||||||||||||||||
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Crystal grow | Method: vapor diffusion / pH: 4.5 Details: 30 % PEG 1500, PH 4.5 FOR ACETATE BUFFER METHOD: HANGING DROP VAPOUR DIFFUSION, vapor diffusion | ||||||||||||||||||||
Crystal grow | *PLUS Method: vapor diffusion, hanging drop | ||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 120 K |
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Diffraction source | Source: ROTATING ANODE / Type: RIGAKU FR-C / Wavelength: 1.5418 |
Detector | Type: RIGAKU RAXIS IIC / Detector: IMAGE PLATE / Date: Feb 17, 1997 / Details: FOCUSING MIRRORS |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.75→15 Å / Num. obs: 18747 / % possible obs: 95.6 % / Redundancy: 6.98 % / Biso Wilson estimate: 18.51 Å2 / Rmerge(I) obs: 0.047 / Net I/σ(I): 31.4 |
Reflection shell | Resolution: 1.75→1.78 Å / Redundancy: 3.21 % / Rmerge(I) obs: 0.245 / Mean I/σ(I) obs: 5.96 / % possible all: 68.5 |
Reflection | *PLUS % possible obs: 93.7 % / Redundancy: 6.77 % |
Reflection shell | *PLUS Lowest resolution: 1.84 Å / % possible obs: 67.9 % / Redundancy: 2.78 % / Rmerge(I) obs: 0.287 |
-Processing
Software |
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Refinement | Method to determine structure: MIR / Resolution: 1.75→15 Å / Cross valid method: FREE R
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Displacement parameters | Biso mean: 20.4 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.75→15 Å
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Refine LS restraints |
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Software | *PLUS Name: REFMAC / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor obs: 0.187 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |