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- PDB-1moz: ADP-ribosylation factor-like 1 (ARL1) from Saccharomyces cerevisiae -
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Open data
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Basic information
Entry | Database: PDB / ID: 1moz | ||||||
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Title | ADP-ribosylation factor-like 1 (ARL1) from Saccharomyces cerevisiae | ||||||
![]() | ADP-ribosylation factor-like protein 1 | ||||||
![]() | PROTEIN BINDING / GTP-BINDING | ||||||
Function / homology | ![]() Retrograde transport at the Trans-Golgi-Network / trans-Golgi network membrane organization / cytoplasm to vacuole targeting by the Cvt pathway / protein localization to Golgi apparatus / protein localization to phagophore assembly site / protein targeting to vacuole / Golgi to plasma membrane protein transport / protein-containing complex localization / vesicle-mediated transport / response to endoplasmic reticulum stress ...Retrograde transport at the Trans-Golgi-Network / trans-Golgi network membrane organization / cytoplasm to vacuole targeting by the Cvt pathway / protein localization to Golgi apparatus / protein localization to phagophore assembly site / protein targeting to vacuole / Golgi to plasma membrane protein transport / protein-containing complex localization / vesicle-mediated transport / response to endoplasmic reticulum stress / macroautophagy / intracellular protein transport / trans-Golgi network / endocytosis / endosome membrane / GTPase activity / GTP binding / Golgi apparatus / cytosol Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Amor, J.C. / Horton, J.R. / Zhu, X. / Wang, Y. / Sullards, C. / Ringe, D. / Cheng, X. / Kahn, R.A. | ||||||
![]() | ![]() Title: Structures of Yeast ARF2 and ARL1: DISTINCT ROLES FOR THE N TERMINUS IN THE STRUCTURE AND FUNCTION OF ARF FAMILY GTPases Authors: Amor, J.C. / Horton, J.R. / Zhu, X. / Wang, Y. / Sullards, C. / Ringe, D. / Cheng, X. / Kahn, R.A. #1: ![]() Title: ADP-ribosylation factors (ARFs) and ARF-like 1 (ARL1) have both specific and shared effectors: characterizing ARL1-binding proteins. Authors: Van Valkenburgh, H. / Shern, J.F. / Sharer, J.D. / Zhu, X. / Kahn, R.A. #2: ![]() Title: Characterization of an ADP-ribosylation factor-like 1 protein in Saccharomyces cerevisiae. Authors: Lee, F.J. / Huang, C.F. / Yu, W.L. / Buu, L.M. / Lin, C.Y. / Huang, M.C. / Moss, J. / Vaughan, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 75.8 KB | Display | ![]() |
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PDB format | ![]() | 61.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 505.3 KB | Display | ![]() |
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Full document | ![]() | 517.8 KB | Display | |
Data in XML | ![]() | 10.6 KB | Display | |
Data in CIF | ![]() | 15 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1mr3C ![]() 1rrfS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 20454.330 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() Plasmid: PET3C / Species (production host): Escherichia coli / Production host: ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.5 Å3/Da / Density % sol: 64.89 % | ||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 289 K / Method: vapor diffusion, hanging drop / pH: 8.5 Details: polyethylene glycol 8000, TRIS, GDP, MgCl2, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IV / Detector: IMAGE PLATE / Date: Mar 30, 1999 / Details: first generation Osmic multilayer |
Radiation | Monochromator: Confocal Multilayer Optics / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 3.17→28 Å / Num. all: 9420 / Num. obs: 9179 / % possible obs: 97.5 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 3.3 % / Rmerge(I) obs: 0.071 / Net I/σ(I): 16 |
Reflection shell | Resolution: 3.17→3.22 Å / Rmerge(I) obs: 0.217 / Num. unique all: 453 / % possible all: 94.6 |
Reflection | *PLUS Lowest resolution: 28 Å / Num. measured all: 30535 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1RRF Resolution: 3.17→28 Å / Cross valid method: THROUGHOUT / σ(F): 0 / Stereochemistry target values: Engh & Huber
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 3.17→28 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 3.17→3.22 Å / Rfactor Rfree error: 0.018
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Refinement | *PLUS Lowest resolution: 28 Å / Rfactor Rfree: 0.242 | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS |