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- PDB-1mm0: Solution structure of termicin, an antimicrobial peptide from the... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1mm0 | ||||||
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Title | Solution structure of termicin, an antimicrobial peptide from the termite Pseudacanthotermes spiniger | ||||||
![]() | Termicin | ||||||
![]() | ANTIMICROBIAL PROTEIN / Termite / Cytein-rich / Antimicrobial peptide / Insect defensin / CSab motif | ||||||
Function / homology | Termicin / Antifungal peptide termicin / Knottin, scorpion toxin-like superfamily / defense response to fungus / killing of cells of another organism / defense response to bacterium / extracellular region / Termicin![]() | ||||||
Biological species | ![]() | ||||||
Method | SOLUTION NMR / molecular dynamics | ||||||
![]() | Da Silva, P. / Jouvensal, L. / Lamberty, M. / Bulet, P. / Caille, A. / Vovelle, F. | ||||||
![]() | ![]() Title: Solution structure of termicin, an antimicrobial peptide from the termite Pseudacanthotermes spiniger Authors: Da Silva, P. / Jouvensal, L. / Lamberty, M. / Bulet, P. / Caille, A. / Vovelle, F. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 218.7 KB | Display | ![]() |
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PDB format | ![]() | 188.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 334.6 KB | Display | ![]() |
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Full document | ![]() | 414.6 KB | Display | |
Data in XML | ![]() | 11.4 KB | Display | |
Data in CIF | ![]() | 19.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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NMR ensembles |
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Components
#1: Protein/peptide | Mass: 4227.878 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Production host: ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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NMR details | Text: This structure was determined using standard 2D homonuclear techniques. |
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Sample preparation
Details | Contents: 2mM Termicin; 90% H2O, 10% D2O / Solvent system: 90% H2O/10% D2O |
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Sample conditions | pH: 3.9 / Pressure: ambient / Temperature: 300 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
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Processing
NMR software |
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Refinement | Method: molecular dynamics / Software ordinal: 1 Details: the structures are based on a total of 834 restraints, 796 NOE-derived distance constraints, 26 dihedral angle restraints, 12 distance restraints from hydrogen bonds. | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the least restraint violations, structures with the lowest energy Conformers calculated total number: 50 / Conformers submitted total number: 20 |