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Yorodumi- PDB-1lzy: X-RAY STRUCTURE OF TURKEY EGG LYSOZYME COMPLEX WITH DI-N-ACETYLCH... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1lzy | |||||||||
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Title | X-RAY STRUCTURE OF TURKEY EGG LYSOZYME COMPLEX WITH DI-N-ACETYLCHITOBIOSE. RECOGNITION AND BINDING OF ALPHA-ANOMERIC FORM | |||||||||
Components | TURKEY EGG WHITE LYSOZYME | |||||||||
Keywords | HYDROLASE (O-GLYCOSYL) | |||||||||
Function / homology | Function and homology information glycosaminoglycan binding / cell wall macromolecule catabolic process / lysozyme / lysozyme activity / killing of cells of another organism / defense response to Gram-positive bacterium / extracellular space / identical protein binding / cytoplasm Similarity search - Function | |||||||||
Biological species | Meleagris gallopavo (turkey) | |||||||||
Method | X-RAY DIFFRACTION / Resolution: 1.55 Å | |||||||||
Authors | Harata, K. | |||||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 1993 Title: X-ray structure of monoclinic turkey egg lysozyme at 1.3 A resolution. Authors: Harata, K. #1: Journal: Acta Crystallogr.,Sect.D / Year: 1993 Title: X-Ray Structure of Monoclinic Turkey Egg Lysozyme at 1.3 Angstroms Resolution Authors: Harata, K. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1lzy.cif.gz | 35.4 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1lzy.ent.gz | 26.4 KB | Display | PDB format |
PDBx/mmJSON format | 1lzy.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1lzy_validation.pdf.gz | 757.5 KB | Display | wwPDB validaton report |
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Full document | 1lzy_full_validation.pdf.gz | 760.5 KB | Display | |
Data in XML | 1lzy_validation.xml.gz | 8.6 KB | Display | |
Data in CIF | 1lzy_validation.cif.gz | 11.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/lz/1lzy ftp://data.pdbj.org/pub/pdb/validation_reports/lz/1lzy | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 14228.105 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Meleagris gallopavo (turkey) / Tissue: EGG WHITE / References: UniProt: P00703, lysozyme |
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#2: Polysaccharide | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose Source method: isolated from a genetically manipulated source |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 1.92 Å3/Da / Density % sol: 36.1 % |
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 1.55→10 Å / Observed criterion σ(I): 3 |
-Processing
Software |
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Refinement | Rfactor Rwork: 0.175 / Rfactor obs: 0.175 / Highest resolution: 1.55 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.55 Å
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Refine LS restraints |
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