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Open data
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Basic information
Entry | Database: PDB / ID: 1lzt | ||||||
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Title | REFINEMENT OF TRICLINIC LYSOZYME | ||||||
![]() | HEN EGG WHITE LYSOZYME | ||||||
![]() | HYDROLASE(O-GLYCOSYL) | ||||||
Function / homology | ![]() Lactose synthesis / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Hodsdon, J.M. / Brown, G.M. / Sieker, L.C. / Jensen, L.H. | ||||||
![]() | ![]() Title: Refinement of triclinic lysozyme: I. Fourier and least-squares methods. Authors: Hodsdon, J.M. / Brown, G.M. / Sieker, L.C. / Jensen, L.H. #1: ![]() Title: Structures of Triclinic Mono-and Di-N-Acetylglucosamine. Lysozyme Complexes-A Crystallographic Study Authors: Kurachi, K. / Sieker, L.C. / Jensen, L.H. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 43.2 KB | Display | ![]() |
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PDB format | ![]() | 28.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Atom site foot note | 1: SEE REMARK 5. |
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Components
#1: Protein | Mass: 14331.160 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Water | ChemComp-HOH / ![]() |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.83 Å3/Da / Density % sol: 32.65 % | ||||||||||||||||||||||||
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Crystal grow![]() | *PLUS pH: 4.55 / Method: unknown / Details: pH is adjusted to 4.55 with 0.1M scetic acid | ||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.54 Å / Num. obs: 7838 |
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Processing
Software | Name: SHARP / Classification: phasing | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 1.97→10 Å Details: RESIDUES 101 THROUGH 103 ARE GENERALLY PROPERLY POSITIONED BUT THE ELECTRON DENSITY IS NOT SHARP HERE. DETAILED ANALYSIS OF THIS REGION SHOULD BE DONE VERY CAUTIOUSLY.
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Refinement step | Cycle: LAST / Resolution: 1.97→10 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.97 Å / Lowest resolution: 10 Å / Num. reflection obs: 7142 / Rfactor obs: 0.254 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS Type: o_angle_d |