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Yorodumi- PDB-1l6h: Solution Structure of Plant nsLTP2 purified from Rice (oryza Sativa) -
+Open data
-Basic information
Entry | Database: PDB / ID: 1l6h | ||||||
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Title | Solution Structure of Plant nsLTP2 purified from Rice (oryza Sativa) | ||||||
Components | Non-Specific Lipid Transfer Protein | ||||||
Keywords | LIPID TRANSPORT / nsLTP2 / Plant LTP / lipid transfer | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Oryza sativa (Asian cultivated rice) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Model type details | minimized average | ||||||
Authors | Samuel, D. / Lyu, P.-C. | ||||||
Citation | Journal: J.Biol.Chem. / Year: 2002 Title: Solution structure of plant nonspecific lipid transfer protein-2 from rice (Oryza sativa). Authors: Samuel, D. / Liu, Y.J. / Cheng, C.S. / Lyu, P.C. #1: Journal: Biochem.Biophys.Res.Commun. / Year: 2002 Title: Purification and characterization of a novel 7-kDa non-specific lipid transfer protein-2 from rice (Oryza sativa) Authors: Liu, Y.-J. / Samuel, D. / Lin, C.-H. / Lyu, P.-C. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1l6h.cif.gz | 25.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1l6h.ent.gz | 19.6 KB | Display | PDB format |
PDBx/mmJSON format | 1l6h.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/l6/1l6h ftp://data.pdbj.org/pub/pdb/validation_reports/l6/1l6h | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 7017.030 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Oryza sativa (Asian cultivated rice) / References: UniProt: P83210, UniProt: Q10ST8*PLUS |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Solvent system: 90% H2O/10% D2O |
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Sample conditions | pH: 6.4 / Temperature: 298 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 600 MHz |
-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: The structure was based on a total of 862 distance constraints, 813 are NOE-derived distance constrains, 30 diestance restraints from hydrogen bonds, 19 dihedral angle restrains. | ||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||
NMR ensemble | Conformers submitted total number: 1 |