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Yorodumi- PDB-1kis: TAR-TAR "KISSING" HAIRPIN COMPLEX DERIVED FROM THE HIV GENOME, NM... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1kis | ||||||
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Title | TAR-TAR "KISSING" HAIRPIN COMPLEX DERIVED FROM THE HIV GENOME, NMR, 1 STRUCTURE | ||||||
Components |
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Keywords | RNA / RIBONUCLEIC ACID | ||||||
Function / homology | RNA / RNA (> 10) Function and homology information | ||||||
Biological species | synthetic construct (others) | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Chang, K.Y. / Tinoco Jr, I. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1997 Title: The structure of an RNA "kissing" hairpin complex of the HIV TAR hairpin loop and its complement. Authors: Chang, K.Y. / Tinoco Jr., I. #1: Journal: Proc.Natl.Acad.Sci.USA / Year: 1994 Title: Characterization of a "Kissing" Hairpin Complex Derived from the Human Immunodeficiency Virus Genome Authors: Chang, K.Y. / Tinoco Jr, I. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1kis.cif.gz | 28.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1kis.ent.gz | 19.1 KB | Display | PDB format |
PDBx/mmJSON format | 1kis.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1kis_validation.pdf.gz | 308.4 KB | Display | wwPDB validaton report |
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Full document | 1kis_full_validation.pdf.gz | 309.8 KB | Display | |
Data in XML | 1kis_validation.xml.gz | 1.8 KB | Display | |
Data in CIF | 1kis_validation.cif.gz | 2.1 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ki/1kis ftp://data.pdbj.org/pub/pdb/validation_reports/ki/1kis | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 5168.135 Da / Num. of mol.: 1 / Fragment: TRANSCRIPTIONAL ACTIVATION RESPONSE (TAR) REGION / Source method: obtained synthetically Details: THE OLIGONUCLEOTIDES WERE SYNTHESIZED ENZYMATICALLY. Source: (synth.) synthetic construct (others) |
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#2: RNA chain | Mass: 5073.071 Da / Num. of mol.: 1 / Fragment: COMPLEMENTARY LOOP SEQUENCE (TAR*) REGION / Source method: obtained synthetically Details: THE OLIGONUCLEOTIDES WERE SYNTHESIZED ENZYMATICALLY. Source: (synth.) synthetic construct (others) |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-NMR measurement
NMR spectrometer |
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-Processing
Software |
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NMR software | Name: X-PLOR / Version: 3.1 / Developer: BRUNGER / Classification: refinement | ||||||||||||
Refinement | Method: simulated annealing / Software ordinal: 1 Details: simulated annealing-restrained molecular dynamics protocol followed by an energy minimization step | ||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 17 / Conformers submitted total number: 1 |