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- PDB-1kaj: CONFORMATION OF AN RNA PSEUDOKNOT FROM MOUSE MAMMARY TUMOR VIRUS,... -

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Basic information

Entry
Database: PDB / ID: 1kaj
TitleCONFORMATION OF AN RNA PSEUDOKNOT FROM MOUSE MAMMARY TUMOR VIRUS, NMR, 1 STRUCTURE
ComponentsRNA PSEUDOKNOT APK
KeywordsRNA / PSEUDOKNOT / FRAMESHIFTING / RETROVIRUS / RIBONUCLEIC ACID
Function / homologyRNA / RNA (> 10)
Function and homology information
MethodSOLUTION NMR
AuthorsKang, H. / Hines, J.V. / Tinoco Junior, I.
Citation
Journal: J.Mol.Biol. / Year: 1996
Title: Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus.
Authors: Kang, H. / Hines, J.V. / Tinoco Jr., I.
#1: Journal: J.Mol.Biol. / Year: 1995
Title: The Structure of an RNA Pseudoknot that Causes Efficient Frameshifting in Mouse Mammary Tumor Virus
Authors: Shen, L.X. / Tinoco Junior, I.
History
DepositionFeb 21, 1996Processing site: BNL
Revision 1.0Jul 11, 1996Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Feb 23, 2022Group: Database references / Derived calculations / Other
Category: database_2 / pdbx_database_status ...database_2 / pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession / _pdbx_database_status.process_site
Revision 1.4May 22, 2024Group: Data collection / Category: chem_comp_atom / chem_comp_bond

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: RNA PSEUDOKNOT APK


Theoretical massNumber of molelcules
Total (without water)10,3321
Polymers10,3321
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)1 / -
Representative

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Components

#1: RNA chain RNA PSEUDOKNOT APK / APK


Mass: 10332.243 Da / Num. of mol.: 1 / Source method: obtained synthetically

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

Software
NameClassification
X-PLORmodel building
X-PLORrefinement
X-PLORphasing
NMR softwareName: X-PLOR / Developer: BRUNGER / Classification: refinement
NMR ensembleConformers submitted total number: 1

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