+Open data
-Basic information
Entry | Database: PDB / ID: 1jo7 | ||||||
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Title | Solution Structure of Influenza A Virus Promoter | ||||||
Components | Influenza A virus promoter RNA | ||||||
Keywords | RNA / RNA panhandle / AAU AC mismatch / bending / internal loop / UUCG | ||||||
Function / homology | RNA / RNA (> 10) Function and homology information | ||||||
Method | SOLUTION NMR / Distance geometry, Simulated annealing + Susceptibility anisotropy | ||||||
Authors | Bae, S.-H. / Cheong, H.-K. / Lee, J.-H. / Cheong, C. / Kainosho, M. / Choi, B.-S. | ||||||
Citation | Journal: Proc.Natl.Acad.Sci.USA / Year: 2001 Title: Structural features of an influenza virus promoter and their implications for viral RNA synthesis. Authors: Bae, S.H. / Cheong, H.K. / Lee, J.H. / Cheong, C. / Kainosho, M. / Choi, B.S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1jo7.cif.gz | 648.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1jo7.ent.gz | 557.9 KB | Display | PDB format |
PDBx/mmJSON format | 1jo7.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1jo7_validation.pdf.gz | 315.2 KB | Display | wwPDB validaton report |
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Full document | 1jo7_full_validation.pdf.gz | 517 KB | Display | |
Data in XML | 1jo7_validation.xml.gz | 17.9 KB | Display | |
Data in CIF | 1jo7_validation.cif.gz | 31.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/jo/1jo7 ftp://data.pdbj.org/pub/pdb/validation_reports/jo/1jo7 | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: RNA chain | Mass: 9912.893 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: T7 in vitro transcription |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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NMR experiment | Type: DQF-COSY |
NMR details | Text: The structure was determined using standard 2D and 3D techniques |
-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | ||||||||||||||||||||
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Radiation wavelength | Relative weight: 1 | ||||||||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: Distance geometry, Simulated annealing + Susceptibility anisotropy Software ordinal: 1 Details: The structures are refined using residual dipolar coupling constraints | ||||||||||||||||||||
NMR representative | Selection criteria: major conformers(1-15) | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: The submitted conformer models are the 32 structures with lowest energy and acceptable covalent geometry Conformers calculated total number: 200 / Conformers submitted total number: 32 |