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- PDB-1j8y: Signal Recognition Particle conserved GTPase domain from A. ambiv... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1j8y | ||||||
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Title | Signal Recognition Particle conserved GTPase domain from A. ambivalens T112A mutant | ||||||
![]() | SIGNAL RECOGNITION 54 KDA PROTEIN | ||||||
![]() | SIGNALING PROTEIN | ||||||
Function / homology | ![]() signal recognition particle / endoplasmic reticulum signal peptide binding / signal-recognition-particle GTPase / 7S RNA binding / SRP-dependent cotranslational protein targeting to membrane, translocation / GTPase activity / GTP binding / ATP hydrolysis activity / cytosol Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Montoya, G. / te Kaat, K. / Moll, R. / Schaerfer, G. / Sinning, I. | ||||||
![]() | ![]() Title: The crystal structure of the conserved GTPase of SRP54 from the archaeon Acidianus ambivalens and its comparison with related structures suggests a model for the SRP-SRP receptor complex. Authors: Montoya, G. / Kaat, K. / Moll, R. / Schafer, G. / Sinning, I. #1: ![]() Title: Crystallization and Preliminary X-ray Diffraction Studies on the Conserved GTPase Domain of the Signal Recognition Particle from Acidianus ambivalens. Authors: Montoya, G. / te Kaat, K. / Moll, R. / Schafer, G. / Sinning, I. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 65.3 KB | Display | ![]() |
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PDB format | ![]() | 49.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 362.3 KB | Display | ![]() |
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Full document | ![]() | 368.6 KB | Display | |
Data in XML | ![]() | 7.4 KB | Display | |
Data in CIF | ![]() | 10.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 32809.895 Da / Num. of mol.: 1 / Fragment: G-DOMAIN, GTPASE DOMAIN / Mutation: T112A Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.28 Å3/Da / Density % sol: 46.02 % | |||||||||||||||||||||||||
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Crystal grow | *PLUS Temperature: 20 ℃ / Method: vapor diffusion, hanging drop | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 110 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 1.95→50 Å / Num. obs: 21100 |
Reflection | *PLUS Lowest resolution: 50 Å / % possible obs: 99.6 % / Num. measured all: 450721 / Rmerge(I) obs: 0.069 |
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Processing
Refinement | Method to determine structure: ![]()
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Displacement parameters |
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Refinement step | Cycle: LAST / Resolution: 2→500 Å
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Refinement | *PLUS Highest resolution: 2 Å / Lowest resolution: 500 Å / % reflection Rfree: 5.1 % | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS |