登録情報 データベース : PDB / ID : 1j8v 構造の表示 ダウンロードとリンクタイトル Crystal structure of barley beta-D-glucan glucohydrolase isoenzyme Exo1 in complex with 4'-nitrophenyl 3I-thiolaminaritrioside 要素Beta-D-glucan glucohydrolase isoenzyme EXO1 詳細 キーワード HYDROLASE / 2-domain fold / ligand-protein complex機能・相同性 機能・相同性情報分子機能 ドメイン・相同性 構成要素
glucan catabolic process / beta-glucosidase / beta-glucosidase activity / extracellular region 類似検索 - 分子機能 Glycoside hydrolase family 3 C-terminal domain / Glycoside hydrolase, family 3, N-terminal domain / Glycoside hydrolase family 3 C-terminal domain / Glycosyl hydrolase family 3 C-terminal domain / Glycoside hydrolase family 3 C-terminal domain superfamily / Glycoside hydrolase, family 3, N-terminal / Glycoside hydrolase, family 3, N-terminal domain superfamily / Glycosyl hydrolase family 3 N terminal domain / Glycoside hydrolase superfamily / TIM Barrel ... Glycoside hydrolase family 3 C-terminal domain / Glycoside hydrolase, family 3, N-terminal domain / Glycoside hydrolase family 3 C-terminal domain / Glycosyl hydrolase family 3 C-terminal domain / Glycoside hydrolase family 3 C-terminal domain superfamily / Glycoside hydrolase, family 3, N-terminal / Glycoside hydrolase, family 3, N-terminal domain superfamily / Glycosyl hydrolase family 3 N terminal domain / Glycoside hydrolase superfamily / TIM Barrel / Alpha-Beta Barrel / Rossmann fold / 3-Layer(aba) Sandwich / Alpha Beta 類似検索 - ドメイン・相同性生物種 Hordeum vulgare (オオムギ)手法 X線回折 / 分子置換 / 解像度 : 2.4 Å 詳細データ登録者 Hrmova, M. / De Gori, R. / Smith, B.J. / Fairweather, J.K. / Driguez, H. / Varghese, J.N. / Fincher, G.B. 引用ジャーナル : Plant Cell / 年 : 2002タイトル : Structural basis for broad substrate specificity in higher plant beta-D-glucan glucohydrolases.著者 : Hrmova, M. / De Gori, R. / Smith, B.J. / Fairweather, J.K. / Driguez, H. / Varghese, J.N. / Fincher, G.B. 履歴 登録 2001年5月22日 登録サイト : RCSB / 処理サイト : RCSB改定 1.0 2002年6月12日 Provider : repository / タイプ : Initial release改定 1.1 2008年4月27日 Group : Version format compliance改定 1.2 2011年7月13日 Group : Non-polymer description / Version format compliance改定 2.0 2020年7月29日 Group : Advisory / Atomic model ... Advisory / Atomic model / Data collection / Derived calculations / Structure summary カテゴリ : atom_site / chem_comp ... atom_site / chem_comp / entity / pdbx_branch_scheme / pdbx_chem_comp_identifier / pdbx_entity_branch / pdbx_entity_branch_descriptor / pdbx_entity_branch_link / pdbx_entity_branch_list / pdbx_entity_nonpoly / pdbx_nonpoly_scheme / pdbx_struct_assembly_gen / pdbx_unobs_or_zero_occ_atoms / struct_asym / struct_conn / struct_site / struct_site_gen Item : _atom_site.B_iso_or_equiv / _atom_site.Cartn_x ... _atom_site.B_iso_or_equiv / _atom_site.Cartn_x / _atom_site.Cartn_y / _atom_site.Cartn_z / _atom_site.auth_asym_id / _atom_site.auth_atom_id / _atom_site.auth_comp_id / _atom_site.auth_seq_id / _atom_site.label_asym_id / _atom_site.label_atom_id / _atom_site.label_comp_id / _atom_site.label_entity_id / _atom_site.type_symbol / _chem_comp.name / _chem_comp.type / _pdbx_struct_assembly_gen.asym_id_list / _pdbx_unobs_or_zero_occ_atoms.label_asym_id / _struct_conn.pdbx_dist_value / _struct_conn.pdbx_leaving_atom_flag / _struct_conn.pdbx_role / _struct_conn.ptnr1_auth_asym_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr2_auth_asym_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_comp_id 解説 : Carbohydrate remediation / Provider : repository / タイプ : Remediation改定 2.1 2023年8月16日 Group : Data collection / Database references ... Data collection / Database references / Refinement description / Structure summary カテゴリ : chem_comp / chem_comp_atom ... chem_comp / chem_comp_atom / chem_comp_bond / database_2 / pdbx_initial_refinement_model Item : _chem_comp.pdbx_synonyms / _database_2.pdbx_DOI / _database_2.pdbx_database_accession
すべて表示 表示を減らす Remark 600 HETEROGEN The only part of the 4'-Nitrophenyl-S-(beta- D-Glucopyranosyl)-(1->3)-(3-thio-beta- D- ... HETEROGEN The only part of the 4'-Nitrophenyl-S-(beta- D-Glucopyranosyl)-(1->3)-(3-thio-beta- D-glucopyranosyl)-(1->3)-beta-D-glucopyranoside ligand seen in the density is the thiolaminaribiosyl portion. The 4'-Nitrophenyl-(beta-D-Glucopyranosyl) moiety is disordered. Remark 999 SEQUENCE The sequence in the GenBank entry might be a sequencing error at residue 345. The electron ... SEQUENCE The sequence in the GenBank entry might be a sequencing error at residue 345. The electron density unambiguously proved the presence of LYS instead of ASN at this residue.