[English] 日本語
![](img/lk-miru.gif)
- PDB-1irr: Solution structure of paralytic peptide of the silkworm, Bombyx mori -
+
Open data
-
Basic information
Entry | Database: PDB / ID: 1irr | ||||||
---|---|---|---|---|---|---|---|
Title | Solution structure of paralytic peptide of the silkworm, Bombyx mori | ||||||
![]() | paralytic peptide | ||||||
![]() | CYTOKINE / single beta sheet | ||||||
Function / homology | Paralytic/GBP/PSP peptide / Paralytic/GBP/PSP peptide / Paralytic peptide![]() | ||||||
Method | SOLUTION NMR / distance geometry simulated annealing | ||||||
![]() | Miura, K. / Kamimura, M. / Aizawa, T. / Kiuchi, M. / Hayakawa, Y. / Mizuguchi, M. / Kawano, K. | ||||||
![]() | ![]() Title: Solution structure of paralytic peptide of silkworm, Bombyx mori Authors: Miura, K. / Kamimura, M. / Aizawa, T. / Kiuchi, M. / Hayakawa, Y. / Mizuguchi, M. / Kawano, K. | ||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 120.3 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 83.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 337.4 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 451.6 KB | Display | |
Data in XML | ![]() | 8.3 KB | Display | |
Data in CIF | ![]() | 13.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
---|---|
Other databases |
|
-
Links
-
Assembly
Deposited unit | ![]()
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-
Components
#1: Protein/peptide | Mass: 2466.793 Da / Num. of mol.: 1 / Fragment: residues 1-23 / Source method: obtained synthetically / Details: This sequence occurs naturally in silkworm. / References: UniProt: Q95YI2 |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
| ||||||||||||||||||||||||||||
NMR details | Text: This structure was determined using standard 2D homonuclear techniques. |
-
Sample preparation
Details |
| ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample conditions |
| ||||||||||||
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
---|---|
Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Bruker DMX / Manufacturer: Bruker / Model: DMX / Field strength: 500 MHz |
-
Processing
NMR software |
| ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method: distance geometry simulated annealing / Software ordinal: 1 Details: the structures are based on a total of 200 restraints, 200 are NOE-derived unambiguous distance constraints, 72 are NOE-derived ambiguous distance constraints, 17 dihedral angle ...Details: the structures are based on a total of 200 restraints, 200 are NOE-derived unambiguous distance constraints, 72 are NOE-derived ambiguous distance constraints, 17 dihedral angle restraints,14 distance restraints from hydrogen bonds. | ||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 100 / Conformers submitted total number: 20 |