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- PDB-1iml: CYSTEINE RICH INTESTINAL PROTEIN, NMR, 48 STRUCTURES -

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Basic information

Entry
Database: PDB / ID: 1iml
TitleCYSTEINE RICH INTESTINAL PROTEIN, NMR, 48 STRUCTURES
ComponentsCYSTEINE RICH INTESTINAL PROTEIN
KeywordsMETAL BINDING PROTEIN / METAL-BINDING PROTEIN / LIM DOMAIN PROTEIN
Function / homology
Function and homology information


prostate gland stromal morphogenesis / : / DNA binding, bending / cellular response to antibiotic / cellular response to UV-B / response to zinc ion / minor groove of adenine-thymine-rich DNA binding / peptide binding / intrinsic apoptotic signaling pathway in response to DNA damage / regulation of gene expression ...prostate gland stromal morphogenesis / : / DNA binding, bending / cellular response to antibiotic / cellular response to UV-B / response to zinc ion / minor groove of adenine-thymine-rich DNA binding / peptide binding / intrinsic apoptotic signaling pathway in response to DNA damage / regulation of gene expression / immune response / zinc ion binding / cytoplasm
Similarity search - Function
Cysteine Rich Protein / Cysteine Rich Protein / LIM zinc-binding domain signature. / LIM domain / Zinc-binding domain present in Lin-11, Isl-1, Mec-3. / Zinc finger, LIM-type / LIM domain profile. / Ribbon / Mainly Beta
Similarity search - Domain/homology
Cysteine-rich protein 1 / Cysteine-rich protein 1
Similarity search - Component
Biological speciesRattus rattus (black rat)
MethodSOLUTION NMR
AuthorsPerez-Alvarado, G.C. / Kosa, J.L. / Louis, H.A. / Beckerle, M.C. / Winge, D.R. / Summers, M.F.
Citation
Journal: J.Mol.Biol. / Year: 1996
Title: Structure of the cysteine-rich intestinal protein, CRIP.
Authors: Perez-Alvarado, G.C. / Kosa, J.L. / Louis, H.A. / Beckerle, M.C. / Winge, D.R. / Summers, M.F.
History
DepositionDec 23, 1995Processing site: BNL
Revision 1.0Jul 11, 1996Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Nov 29, 2017Group: Derived calculations / Other / Structure summary
Category: pdbx_database_status / pdbx_struct_assembly ...pdbx_database_status / pdbx_struct_assembly / pdbx_struct_oper_list / struct_conf / struct_conf_type / struct_keywords
Item: _pdbx_database_status.process_site / _struct_keywords.text
Revision 1.4May 1, 2024Group: Data collection / Database references / Derived calculations
Category: chem_comp_atom / chem_comp_bond ...chem_comp_atom / chem_comp_bond / database_2 / struct_conn / struct_site
Item: _database_2.pdbx_DOI / _database_2.pdbx_database_accession ..._database_2.pdbx_DOI / _database_2.pdbx_database_accession / _struct_conn.ptnr1_auth_comp_id / _struct_conn.ptnr1_auth_seq_id / _struct_conn.ptnr1_label_asym_id / _struct_conn.ptnr1_label_atom_id / _struct_conn.ptnr1_label_comp_id / _struct_conn.ptnr1_label_seq_id / _struct_conn.ptnr2_auth_comp_id / _struct_conn.ptnr2_auth_seq_id / _struct_conn.ptnr2_label_asym_id / _struct_conn.ptnr2_label_atom_id / _struct_conn.ptnr2_label_comp_id / _struct_conn.ptnr2_label_seq_id / _struct_site.pdbx_auth_asym_id / _struct_site.pdbx_auth_comp_id / _struct_site.pdbx_auth_seq_id

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Assembly

Deposited unit
A: CYSTEINE RICH INTESTINAL PROTEIN
hetero molecules


Theoretical massNumber of molelcules
Total (without water)8,5683
Polymers8,4371
Non-polymers1312
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_5551
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)48 / -
Representative

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Components

#1: Protein CYSTEINE RICH INTESTINAL PROTEIN / CRIP


Mass: 8436.692 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Rattus rattus (black rat) / Tissue: SMOOTH MUSCLE / Cell: SMOOTH MUSCLE CELLS / Gene: CRIP / Organ: SMALL INTESTINE / Plasmid: PET-3A NOVAGEN / Species (production host): Escherichia coli / Gene (production host): CRIP / Production host: Escherichia coli BL21(DE3) (bacteria) / Strain (production host): BL21(DE3) / References: UniProt: P04006, UniProt: P63255*PLUS
#2: Chemical ChemComp-ZN / ZINC ION


Mass: 65.409 Da / Num. of mol.: 2 / Source method: obtained synthetically / Formula: Zn

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR

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Sample preparation

Crystal grow
*PLUS
Method: other / Details: NMR

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Processing

NMR softwareName: DSPACE / Developer: HARE RESEARCH INC. / Classification: refinement
NMR ensembleConformers submitted total number: 48

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