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データを開く
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基本情報
登録情報 | データベース: PDB / ID: 1iie | ||||||
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タイトル | HLA-DR ANTIGENS ASSOCIATED INVARIANT CHAIN | ||||||
![]() | PROTEIN (HLA-DR ANTIGENS ASSOCIATED INVARIANT CHAIN) | ||||||
![]() | MAJOR HISTOCOMPATIBILITY COMPLEX / ANTIGEN PROCESSING / OLIGOMERIZATION / CHAPERONIN | ||||||
機能・相同性 | ![]() negative regulation of peptide secretion / macrophage migration inhibitory factor signaling pathway / NOS2-CD74 complex / MHC class II protein binding, via antigen binding groove / antigen processing and presentation of endogenous antigen / positive regulation of dendritic cell antigen processing and presentation / negative regulation of T cell differentiation / macrophage migration inhibitory factor binding / positive regulation of macrophage migration inhibitory factor signaling pathway / protein trimerization ...negative regulation of peptide secretion / macrophage migration inhibitory factor signaling pathway / NOS2-CD74 complex / MHC class II protein binding, via antigen binding groove / antigen processing and presentation of endogenous antigen / positive regulation of dendritic cell antigen processing and presentation / negative regulation of T cell differentiation / macrophage migration inhibitory factor binding / positive regulation of macrophage migration inhibitory factor signaling pathway / protein trimerization / macrophage migration inhibitory factor receptor complex / positive regulation of cytokine-mediated signaling pathway / T cell activation involved in immune response / positive regulation of type 2 immune response / T cell selection / negative thymic T cell selection / positive regulation of prostaglandin biosynthetic process / negative regulation of viral entry into host cell / MHC class II protein binding / negative regulation of mature B cell apoptotic process / positive thymic T cell selection / positive regulation of monocyte differentiation / CD4 receptor binding / positive regulation of kinase activity / positive regulation of chemokine (C-X-C motif) ligand 2 production / positive regulation of neutrophil chemotaxis / vacuole / positive regulation of macrophage cytokine production / prostaglandin biosynthetic process / positive regulation of T cell differentiation / cytokine receptor activity / regulation of macrophage activation / transport vesicle membrane / negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator / nitric-oxide synthase binding / cytokine binding / response to type II interferon / antigen processing and presentation / negative regulation of DNA damage response, signal transduction by p53 class mediator / chaperone cofactor-dependent protein refolding / immunoglobulin mediated immune response / positive regulation of chemokine production / positive regulation of B cell proliferation / protein folding chaperone / MHC class II antigen presentation / multivesicular body / negative regulation of cell migration / lysosomal lumen / trans-Golgi network membrane / positive regulation of interleukin-8 production / lumenal side of endoplasmic reticulum membrane / Cell surface interactions at the vascular wall / intracellular protein transport / clathrin-coated endocytic vesicle membrane / ER to Golgi transport vesicle membrane / MHC class II protein complex / antigen processing and presentation of exogenous peptide antigen via MHC class II / endocytic vesicle membrane / positive regulation of interleukin-6 production / positive regulation of peptidyl-tyrosine phosphorylation / positive regulation of fibroblast proliferation / late endosome / MHC class II protein complex binding / amyloid-beta binding / protein-containing complex assembly / positive regulation of canonical NF-kappaB signal transduction / positive regulation of MAPK cascade / positive regulation of viral entry into host cell / positive regulation of ERK1 and ERK2 cascade / lysosome / protein stabilization / positive regulation of protein phosphorylation / lysosomal membrane / external side of plasma membrane / Golgi membrane / positive regulation of gene expression / negative regulation of apoptotic process / positive regulation of DNA-templated transcription / cell surface / protein-containing complex / extracellular exosome / identical protein binding / membrane / nucleus / plasma membrane / cytoplasm 類似検索 - 分子機能 | ||||||
生物種 | ![]() | ||||||
手法 | 溶液NMR / simulated annealing | ||||||
![]() | Jasanoff, A. / Wagner, G. / Wiley, D.C. | ||||||
![]() | ![]() タイトル: Structure of a trimeric domain of the MHC class II-associated chaperonin and targeting protein Ii. 著者: Jasanoff, A. / Wagner, G. / Wiley, D.C. #1: ![]() タイトル: An Asymmetric Deuterium Labeling Strategy to Identify Interprotomer and Intraprotomer Noes in Oligomeric Proteins 著者: Jasanoff, A. #2: ![]() タイトル: Invariant Chain Made in Escherichia coli Has an Exposed N-Terminal Segment that Blocks Antigen Binding to HLA-DR1 and a Trimeric C-Terminal Segment that Binds Empty HLA-DR1 著者: Park, S.-J. / Sadegh-Nasseri, S. / Wiley, D.C. | ||||||
履歴 |
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構造の表示
構造ビューア | 分子: ![]() ![]() |
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ダウンロードとリンク
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ダウンロード
PDBx/mmCIF形式 | ![]() | 1.4 MB | 表示 | ![]() |
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PDB形式 | ![]() | 1.2 MB | 表示 | ![]() |
PDBx/mmJSON形式 | ![]() | ツリー表示 | ![]() | |
その他 | ![]() |
-検証レポート
文書・要旨 | ![]() | 364 KB | 表示 | ![]() |
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文書・詳細版 | ![]() | 718.7 KB | 表示 | |
XML形式データ | ![]() | 121.3 KB | 表示 | |
CIF形式データ | ![]() | 184.9 KB | 表示 | |
アーカイブディレクトリ | ![]() ![]() | HTTPS FTP |
-関連構造データ
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リンク
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集合体
登録構造単位 | ![]()
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NMR アンサンブル |
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要素
#1: タンパク質 | 分子量: 8984.300 Da / 分子数: 3 / 断片: ECTOPLASMIC TRIMERIZATION DOMAIN (RESIDUES 118-192) / 由来タイプ: 組換発現 / 由来: (組換発現) ![]() ![]() ![]() |
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-実験情報
-実験
実験 | 手法: 溶液NMR | ||||||||||||||||||||
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NMR実験 |
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NMR実験の詳細 | Text: THE STRUCTURE WAS DETERMINED USING DOUBLE- AND TRIPLE-RESONANCE EXPERIMENTS ON SAMPLES OF II 118-192 LABELED WITH COMBINATIONS OF 2H, 13C, AND 15N |
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試料調製
試料状態 | pH: 6.7 / 圧: 1 atm / 温度: 298 K |
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結晶化 | *PLUS 手法: other / 詳細: NMR |
-NMR測定
NMRスペクトロメーター |
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解析
NMR software |
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精密化 | 手法: simulated annealing / ソフトェア番号: 1 詳細: THE TRIMER STRUCTURE WAS CALCULATED USING A SIMULATED ANNEALING PROTOCOL BASED ON THE DIMER REFINEMENT METHODS OF NILGES, PROTEINS 17 : 297-309 (1993) | ||||||||||||
NMRアンサンブル | コンフォーマー選択の基準: LEAST RESTRAINT VIOLATION, GOOD GEOMETRY 計算したコンフォーマーの数: 80 / 登録したコンフォーマーの数: 20 |