+Open data
-Basic information
Entry | Database: PDB / ID: 1id7 | ||||||
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Title | SOLUTION STRUCTURE OF SYR6 | ||||||
Components | SYR6 | ||||||
Keywords | ANTIVIRAL PROTEIN / SYR6 | ||||||
Function / homology | : Function and homology information | ||||||
Method | SOLUTION NMR / 4D simulated annealing | ||||||
Model type details | minimized average | ||||||
Authors | Sato, A. / Kawaguchi, K. / Kimura, K. / Tanimura, R. / Sone, S. | ||||||
Citation | Journal: To be Published Title: A peptide mimetic of IFN, the first proof of a small peptidic agonist for heterodimeric cytokine receptor Authors: Sato, A. / Kawaguchi, K. / Kimura, K. / Tanimura, R. / Sone, S. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1id7.cif.gz | 10.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1id7.ent.gz | 5.7 KB | Display | PDB format |
PDBx/mmJSON format | 1id7.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/id/1id7 ftp://data.pdbj.org/pub/pdb/validation_reports/id/1id7 | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 1784.942 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: chemically synthesized / References: GB : 15076606 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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NMR details | Text: This structure was determined using standard 2D homonuclear techniques. |
-Sample preparation
Details | Contents: 2.0mM SYR6; deuterated dimethyl sulfoxide 100% / Solvent system: deuterated dimethyl sulfoxide 100% |
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Sample conditions | Pressure: ambient / Temperature: 293 K |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
-Processing
NMR software |
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Refinement | Method: 4D simulated annealing / Software ordinal: 1 Details: The average structure of the 11 structures that are based on 66 NOE-derived distance constraints. | ||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||
NMR ensemble | Conformer selection criteria: Average structure of the 11 structures with the least restraint violations Conformers calculated total number: 750 / Conformers submitted total number: 1 |