[English] 日本語
Yorodumi- PDB-1hyp: CRYSTAL STRUCTURE OF HYDROPHOBIC PROTEIN FROM SOYBEAN; A MEMBER O... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1hyp | ||||||
---|---|---|---|---|---|---|---|
Title | CRYSTAL STRUCTURE OF HYDROPHOBIC PROTEIN FROM SOYBEAN; A MEMBER OF A NEW CYSTINE-RICH FAMILY | ||||||
Components | HYDROPHOBIC PROTEIN FROM SOYBEANHydrophobe | ||||||
Keywords | HYDROPHOBIC SEED PROTEIN | ||||||
Function / homology | Hydrophobic seed protein domain / Hydrophobic seed protein / Plant lipid-transfer and hydrophobic proteins / Hydrophobic Seed Protein / Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily / Orthogonal Bundle / Mainly Alpha / Hydrophobic seed protein Function and homology information | ||||||
Biological species | Glycine max (soybean) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.8 Å | ||||||
Authors | Lehmann, M.S. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1993 Title: Crystal structure of hydrophobic protein from soybean; a member of a new cysteine-rich family. Authors: Baud, F. / Pebay-Peyroula, E. / Cohen-Addad, C. / Odani, S. / Lehmann, M.S. #1: Journal: J.Mol.Biol. / Year: 1989 Title: Crystallographic Data for Soybean Hydrophobic Protein Authors: Lehmann, M.S. / Pebay-Peyroula, E. / Cohen-Addad, C. / Odani, S. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1hyp.cif.gz | 25.9 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1hyp.ent.gz | 20.3 KB | Display | PDB format |
PDBx/mmJSON format | 1hyp.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hy/1hyp ftp://data.pdbj.org/pub/pdb/validation_reports/hy/1hyp | HTTPS FTP |
---|
-Related structure data
Similar structure data |
---|
-Links
-Assembly
Deposited unit |
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-Components
#1: Protein | Mass: 8363.831 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Glycine max (soybean) / References: UniProt: P24337 |
---|---|
#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
---|
-Sample preparation
Crystal | Density Matthews: 1.93 Å3/Da / Density % sol: 36.19 % | |||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Crystal grow | *PLUS Method: vapor diffusion, hanging drop | |||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
|
-Data collection
Radiation | Scattering type: x-ray |
---|---|
Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.8 Å / Num. obs: 4943 / % possible obs: 78 % / Rmerge(I) obs: 0.038 |
Reflection shell | *PLUS Highest resolution: 1.8 Å / Lowest resolution: 1.88 Å / % possible obs: 72 % |
-Processing
Software |
| ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Rfactor Rwork: 0.187 / Highest resolution: 1.8 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.8 Å
| ||||||||||||
Refine LS restraints |
| ||||||||||||
Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||
Refinement | *PLUS Num. reflection obs: 4647 / σ(F): 3 / Rfactor obs: 0.187 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |