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- PDB-1hyp: CRYSTAL STRUCTURE OF HYDROPHOBIC PROTEIN FROM SOYBEAN; A MEMBER O... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1hyp | ||||||
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Title | CRYSTAL STRUCTURE OF HYDROPHOBIC PROTEIN FROM SOYBEAN; A MEMBER OF A NEW CYSTINE-RICH FAMILY | ||||||
![]() | HYDROPHOBIC PROTEIN FROM SOYBEAN | ||||||
![]() | HYDROPHOBIC SEED PROTEIN | ||||||
Function / homology | Hydrophobic seed protein domain / Hydrophobic seed protein / Plant lipid-transfer and hydrophobic proteins / Hydrophobic Seed Protein / Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily / Orthogonal Bundle / Mainly Alpha / Hydrophobic seed protein![]() | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
![]() | Lehmann, M.S. | ||||||
![]() | ![]() Title: Crystal structure of hydrophobic protein from soybean; a member of a new cysteine-rich family. Authors: Baud, F. / Pebay-Peyroula, E. / Cohen-Addad, C. / Odani, S. / Lehmann, M.S. #1: ![]() Title: Crystallographic Data for Soybean Hydrophobic Protein Authors: Lehmann, M.S. / Pebay-Peyroula, E. / Cohen-Addad, C. / Odani, S. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 25.9 KB | Display | ![]() |
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PDB format | ![]() | 20.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 359.5 KB | Display | ![]() |
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Full document | ![]() | 360.3 KB | Display | |
Data in XML | ![]() | 3.1 KB | Display | |
Data in CIF | ![]() | 4.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 8363.831 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.93 Å3/Da / Density % sol: 36.19 % | |||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Method: vapor diffusion, hanging drop | |||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.8 Å / Num. obs: 4943 / % possible obs: 78 % / Rmerge(I) obs: 0.038 |
Reflection shell | *PLUS Highest resolution: 1.8 Å / Lowest resolution: 1.88 Å / % possible obs: 72 % |
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Processing
Software |
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Refinement | Rfactor Rwork: 0.187 / Highest resolution: 1.8 Å | ||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.8 Å
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Refine LS restraints |
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Software | *PLUS Name: ![]() | ||||||||||||
Refinement | *PLUS Num. reflection obs: 4647 / σ(F): 3 / Rfactor obs: 0.187 | ||||||||||||
Solvent computation | *PLUS | ||||||||||||
Displacement parameters | *PLUS |