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- PDB-1hpi: MOLECULAR STRUCTURE OF THE OXIDIZED HIGH-POTENTIAL IRON-SULFUR PR... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1hpi | ||||||
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Title | MOLECULAR STRUCTURE OF THE OXIDIZED HIGH-POTENTIAL IRON-SULFUR PROTEIN ISOLATED FROM ECTOTHIORHODOSPIRA VACUOLATA | ||||||
![]() | HIGH POTENTIAL IRON SULFUR PROTEIN | ||||||
![]() | ELECTRON TRANSFER(IRON-SULFUR PROTEIN) | ||||||
Function / homology | ![]() aerobic electron transport chain / 4 iron, 4 sulfur cluster binding / electron transfer activity / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() | ||||||
Method | ![]() | ||||||
![]() | Benning, M.M. / Meyer, T.E. / Rayment, I. / Holden, H.M. | ||||||
![]() | ![]() Title: Molecular structure of the oxidized high-potential iron-sulfur protein isolated from Ectothiorhodospira vacuolata. Authors: Benning, M.M. / Meyer, T.E. / Rayment, I. / Holden, H.M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 26.3 KB | Display | ![]() |
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PDB format | ![]() | 16.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 383.2 KB | Display | ![]() |
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Full document | ![]() | 383.4 KB | Display | |
Data in XML | ![]() | 3.1 KB | Display | |
Data in CIF | ![]() | 4.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 7824.582 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() References: UniProt: P38524 |
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#2: Chemical | ChemComp-SF4 / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.37 Å3/Da / Density % sol: 48.12 % | ||||||||||||||||||||||||||||||
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Crystal grow | *PLUS Method: vapor diffusion / Details: in the presence of atmospheric oxygen | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.8 Å / Lowest resolution: 29.2 Å / Num. obs: 7028 / % possible obs: 98 % / Num. measured all: 19816 / Rmerge(I) obs: 0.049 |
Reflection shell | *PLUS Highest resolution: 1.8 Å / Lowest resolution: 1.92 Å / Num. unique obs: 1134 / Num. measured obs: 1918 / Rmerge(I) obs: 0.095 |
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Processing
Software | Name: TNT / Classification: refinement | ||||||||||||||||||||||||||||||
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Refinement | Rfactor obs: 0.163 / Highest resolution: 1.8 Å | ||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.8 Å
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Refine LS restraints |
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Software | *PLUS Name: TNT / Classification: refinement | ||||||||||||||||||||||||||||||
Refinement | *PLUS Lowest resolution: 30 Å / Num. reflection obs: 6973 / Rfactor obs: 0.163 | ||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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