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Open data
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Basic information
Entry | Database: PDB / ID: 1hmk | ||||||
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Title | RECOMBINANT GOAT ALPHA-LACTALBUMIN | ||||||
![]() | PROTEIN (ALPHA-LACTALBUMIN) | ||||||
![]() | TRANSFERASE / LACTOSE SYNTHASE COMPONENT / CALCIUM BINDING METALLOPROTEIN / GLYCOPROTEIN | ||||||
Function / homology | ![]() lactose synthase activity / lactose biosynthetic process / lysozyme activity / defense response to Gram-negative bacterium / defense response to Gram-positive bacterium / calcium ion binding / protein-containing complex / extracellular region Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Horii, K. / Matsushima, M. / Tsumoto, K. / Kumagai, I. | ||||||
![]() | ![]() Title: Effect of the extra n-terminal methionine residue on the stability and folding of recombinant alpha-lactalbumin expressed in Escherichia coli. Authors: Chaudhuri, T.K. / Horii, K. / Yoda, T. / Arai, M. / Nagata, S. / Terada, T.P. / Uchiyama, H. / Ikura, T. / Tsumoto, K. / Kataoka, H. / Matsushima, M. / Kuwajima, K. / Kumagai, I. #1: ![]() Title: Crystal Structures of Guinea-Pig, Goat and Bovine Alpha-Lactalbumin Highlight the Enhanced Conformational Flexibility of Regions that are Significant for its Action in Lactose Synthase Authors: Pike, A.C. / Brew, K. / Acharya, K.R. #2: ![]() Title: Effects of Amino Acid Substitutions in the Hydrophobic Core of Alpha-Lactalbumin on the Stability of the Molten Globule State Authors: Uchiyama, H. / Perez-Prat, E.M. / Watanabe, K. / Kumagai, I. / Kuwajima, K. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 39.3 KB | Display | ![]() |
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PDB format | ![]() | 26.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 369.6 KB | Display | ![]() |
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Full document | ![]() | 371.4 KB | Display | |
Data in XML | ![]() | 4 KB | Display | |
Data in CIF | ![]() | 6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 14342.254 Da / Num. of mol.: 1 / Mutation: YES Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() |
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#2: Chemical | ChemComp-CA / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.2 Å3/Da / Density % sol: 44.8 % | ||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 293 K / pH: 6 / Details: pH 6.0, temperature 293K | ||||||||||||||||||||||||||||||
Crystal | *PLUS | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 20 ℃ / Method: vapor diffusion, hanging drop | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 282 K |
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Diffraction source | Source: ![]() |
Detector | Type: MACSCIENCE / Detector: IMAGE PLATE / Date: May 1, 1996 / Details: MIRRORS |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.75→30 Å / Num. obs: 12533 / % possible obs: 92.5 % / Observed criterion σ(I): 0.0001 / Redundancy: 5.1 % / Rmerge(I) obs: 0.069 |
Reflection shell | Resolution: 1.75→1.81 Å / Rmerge(I) obs: 0.309 / % possible all: 94.6 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: BABOON ALPHA-LACTALBUMIN Resolution: 2→8 Å / Data cutoff low absF: 0.001 / Cross valid method: THROUGHOUT / σ(F): 2 Details: THE SIDE CHAIN OF GLN 2, WHICH IS CLOSE TO A ROTAION AXIS IN THE CRYSTAL, IS DISORDERED. THE ELECTRON DENSITY IS WELL DEFINED. THE C-TERMINAL TRIPEPTIDE (GLU 121 - LEU 123) IS POORLY DEFINED ...Details: THE SIDE CHAIN OF GLN 2, WHICH IS CLOSE TO A ROTAION AXIS IN THE CRYSTAL, IS DISORDERED. THE ELECTRON DENSITY IS WELL DEFINED. THE C-TERMINAL TRIPEPTIDE (GLU 121 - LEU 123) IS POORLY DEFINED IN THE ELECTRON DENSITY AND THEREFORE THESE RESIDUES HAVE NOT BEEN INCLUDED IN THE FINAL MODEL.
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2→8 Å
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Refine LS restraints |
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Xplor file | Serial no: 1 / Param file: PARHCSDX.PRO / Topol file: TOPHCSDX.PRO | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Software | *PLUS Name: ![]() | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Highest resolution: 2 Å / Lowest resolution: 8 Å / σ(F): 2 / % reflection Rfree: 10 % / Rfactor obs: 0.191 / Rfactor Rfree: 0.278 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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