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- PDB-1hky: Solution structure of a PAN module from Eimeria tenella -

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Basic information

Entry
Database: PDB / ID: 1hky
TitleSolution structure of a PAN module from Eimeria tenella
ComponentsMICRONEME PROTEIN 5 PRECURSOR
KeywordsADHESIN / PAN MODULE / EIMERIA TENELLA
Function / homology
Function and homology information


proteolysis / extracellular region
Similarity search - Function
PAN domain / Hepatocyte Growth Factor / Hepatocyte Growth Factor / divergent subfamily of APPLE domains / Apple domain / APPLE domain / PAN/Apple domain profile. / PAN domain / PAN/Apple domain / 3-Layer(bba) Sandwich / Alpha Beta
Similarity search - Domain/homology
Micronemal protein MIC4, related
Similarity search - Component
Biological speciesEIMERIA TENELLA (eukaryote)
MethodSOLUTION NMR / simulated annealing
AuthorsBrown, P.J. / Mulvey, D. / Potts, J.R. / Tomley, F.M. / Campbell, I.D.
CitationJournal: J.Struct.Funct.Genom. / Year: 2003
Title: Solution Structure of a Pan Module from the Apicomplexan Parasite Eimeria Tenella
Authors: Brown, P.J. / Mulvey, D. / Potts, J.R. / Tomley, F.M. / Campbell, I.D.
History
DepositionOct 3, 2002Deposition site: PDBE / Processing site: PDBE
Revision 1.0Oct 17, 2002Provider: repository / Type: Initial release
Revision 1.1May 8, 2011Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Remark 700 SHEET DETERMINATION METHOD: AUTHOR PROVIDED.

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Assembly

Deposited unit
A: MICRONEME PROTEIN 5 PRECURSOR


Theoretical massNumber of molelcules
Total (without water)9,2331
Polymers9,2331
Non-polymers00
Water00
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
NMR ensembles
DataCriteria
Number of conformers (submitted / calculated)20 / 250LOW ENERGY AND LEAST RESTRAINT VIOLATIONS
RepresentativeModel #1

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Components

#1: Protein MICRONEME PROTEIN 5 PRECURSOR / MIC-5 / ETMIC5


Mass: 9233.349 Da / Num. of mol.: 1 / Fragment: RESIDUES 712-786
Source method: isolated from a genetically manipulated source
Details: CONSTRUCT INCLUDES 11 NON-NATIVE RESIDUES N-TERMINAL TO THR712
Source: (gene. exp.) EIMERIA TENELLA (eukaryote) / Strain: HOUGHTON
Description: ETMIC5 IS A SECRETED PROTEIN FROM THE MICRONEME ORGANELLES
Plasmid: PFLAG-ATS / Production host: ESCHERICHIA COLI (E. coli) / Strain (production host): BL21 / References: UniProt: Q9U966
Sequence details11 NON-NATIVE RESIDUES N-TERMINAL TO THR712

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Experimental details

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Experiment

ExperimentMethod: SOLUTION NMR
NMR experiment
Conditions-IDExperiment-IDSolution-IDType
111NOESY
121TOCSY
131COSY
1411H-15N-NOESY-HSQC 1H-15N-TOCSY-HSQC
151HMQCJ
NMR detailsText: STRUCTURE WAS DETERMINED USING HETERONUCLEAR NMR SPECTROSCOPY ON 15N-LABELLED 9TH PAN MODULE FROM ETMIC5. MODEL 1 HAS LOWEST ENERGY

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Sample preparation

DetailsContents: 0.8 MM IN 93% H2O/7% D2O OR 1.7 MM IN 99.9% D2O
Sample conditionspH: 4.7 / Temperature: 303 K
Crystal grow
*PLUS
Method: other / Details: NMR

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NMR measurement

NMR spectrometer
Field strength (MHz)Spectrometer-ID
5001
6002
7503

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Processing

NMR software
NameDeveloperClassification
X-PLOR3.8BRUNGERrefinement
XPLOR3.8structure solution
RefinementMethod: simulated annealing / Software ordinal: 1 / Details: REFINEMENT DETAILS WILL BE PUBLISHED
NMR ensembleConformer selection criteria: LOW ENERGY AND LEAST RESTRAINT VIOLATIONS
Conformers calculated total number: 250 / Conformers submitted total number: 20

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