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Yorodumi- PDB-1hfn: NMR solution structures of vMIP-II 1-71 from Kaposi's sarcoma-ass... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1hfn | ||||||
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Title | NMR solution structures of vMIP-II 1-71 from Kaposi's sarcoma-associated herpesvirus. | ||||||
Components | VIRAL MACROPHAGE INFLAMMATORY PROTEIN-II | ||||||
Keywords | CHEMOKINE / CXCR4 / ANATAGONIST / VMIP-II | ||||||
Function / homology | Function and homology information CXCR chemokine receptor binding / chemokine activity / immune response / protein-containing complex / extracellular space Similarity search - Function | ||||||
Biological species | HUMAN HERPESVIRUS 8 | ||||||
Method | SOLUTION NMR / simulated annealing | ||||||
Authors | Crump, M.P. / Elisseeva, E. / Gong, J.-H. / Clark-Lewis, I. / Sykes, B.D. | ||||||
Citation | Journal: FEBS Lett. / Year: 2001 Title: Structure/Function of Human Herpesvirus-8 Mip-II (1-71) and the Antagonist N-Terminal Segment (1-10) Authors: Crump, M.P. / Elisseeva, E. / Gong, J.-H. / Clark-Lewis, I. / Sykes, B.D. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1hfn.cif.gz | 845.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1hfn.ent.gz | 744 KB | Display | PDB format |
PDBx/mmJSON format | 1hfn.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/hf/1hfn ftp://data.pdbj.org/pub/pdb/validation_reports/hf/1hfn | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 8142.661 Da / Num. of mol.: 1 / Fragment: RESIDUES 1-71 / Source method: obtained synthetically / Source: (synth.) HUMAN HERPESVIRUS 8 / References: UniProt: Q98157 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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NMR details | Text: SEE 1HFG FOR MINIMIZED AVERAGE STRUCTURE. SEE PAPER FOR FURTHER EXPERIMENTAL DETAILS. |
-Sample preparation
Details | Contents: 1MM DSS, 1MM NAN3, 20MM SODIUM ACETATE |
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Sample conditions | pH: 5.0 / Pressure: 1 atm / Temperature: 303 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Varian UNITY / Manufacturer: Varian / Model: UNITY / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: simulated annealing / Software ordinal: 1 Details: REFINEMENT DETAILS CAN BE FOUND IN THE JOURNAL CITATION. | |||||||||
NMR ensemble | Conformer selection criteria: LEAST RESTRAINT VIOLATION / Conformers calculated total number: 38 / Conformers submitted total number: 38 |