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Yorodumi- PDB-1fxd: REFINED CRYSTAL STRUCTURE OF FERREDOXIN II FROM DESULFOVIBRIO GIG... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1fxd | ||||||
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Title | REFINED CRYSTAL STRUCTURE OF FERREDOXIN II FROM DESULFOVIBRIO GIGAS AT 1.7 ANGSTROMS | ||||||
Components | FERREDOXIN II | ||||||
Keywords | ELECTRON TRANSFER(IRON-SULFUR) | ||||||
Function / homology | Function and homology information 3 iron, 4 sulfur cluster binding / electron transfer activity / iron ion binding Similarity search - Function | ||||||
Biological species | Desulfovibrio gigas (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.7 Å | ||||||
Authors | Kissinger, C.R. / Sieker, L.C. / Adman, E.T. / Jensen, L.H. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1991 Title: Refined crystal structure of ferredoxin II from Desulfovibrio gigas at 1.7 A. Authors: Kissinger, C.R. / Sieker, L.C. / Adman, E.T. / Jensen, L.H. #1: Journal: FEBS Lett. / Year: 1989 Title: The Crystal Structure of the Three-Iron Ferredoxin II from Desulfovibrio Gigas Authors: Kissinger, C.R. / Adman, E.T. / Sieker, L.C. / Jensen, L.H. / Legall, J. #2: Journal: J.Am.Chem.Soc. / Year: 1988 Title: Structure of the 3Fe-4S Cluster in Desulfovibrio Gigas Ferredoxin II Authors: Kissinger, C.R. / Adman, E.T. / Sieker, L.C. / Jensen, L.H. #3: Journal: J.Mol.Biol. / Year: 1984 Title: Crystallization and Preliminary X-Ray Diffraction Study of the 3-Fe Ferredoxin II from the Bacterium Desulfovibrio Gigas Authors: Sieker, L.C. / Adman, E.T. / Jensen, L.H. / Legall, J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1fxd.cif.gz | 20.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1fxd.ent.gz | 14.9 KB | Display | PDB format |
PDBx/mmJSON format | 1fxd.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fx/1fxd ftp://data.pdbj.org/pub/pdb/validation_reports/fx/1fxd | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Components on special symmetry positions |
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-Components
#1: Protein | Mass: 6310.010 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Desulfovibrio gigas (bacteria) / References: UniProt: P00209 |
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#2: Chemical | ChemComp-F3S / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 1.88 Å3/Da / Density % sol: 34.44 % |
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Crystal grow | *PLUS Method: other / Details: Sieker, L.C., (1984) J. Mol. Biol., 179, 151. |
-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.7 Å / Lowest resolution: 2.3 Å / Num. obs: 6228 / Rmerge(I) obs: 0.09 |
-Processing
Software | Name: PROFFT / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Rfactor obs: 0.157 / Highest resolution: 1.7 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 1.7 Å
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Refine LS restraints |
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Refinement | *PLUS Lowest resolution: 8 Å / Num. reflection obs: 4508 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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