[English] 日本語
Yorodumi- PDB-1fsd: FULL SEQUENCE DESIGN 1 (FSD-1) OF BETA BETA ALPHA MOTIF, NMR, 41 ... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1fsd | ||||||
---|---|---|---|---|---|---|---|
Title | FULL SEQUENCE DESIGN 1 (FSD-1) OF BETA BETA ALPHA MOTIF, NMR, 41 STRUCTURES | ||||||
Components | FULL SEQUENCE DESIGN 1 OF BETA BETA ALPHA MOTIF | ||||||
Keywords | NOVEL SEQUENCE / COMPUTATIONAL DESIGN | ||||||
Biological species | synthetic construct (others) | ||||||
Method | SOLUTION NMR / HYBRID DISTANCE GEOMETRY-SIMULATED ANNEALING | ||||||
Authors | Dahiyat, B.I. / Mayo, S.L. | ||||||
Citation | Journal: Science / Year: 1997 Title: De novo protein design: fully automated sequence selection. Authors: Dahiyat, B.I. / Mayo, S.L. | ||||||
History |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Download
PDBx/mmCIF format | 1fsd.cif.gz | 396.2 KB | Display | PDBx/mmCIF format |
---|---|---|---|---|
PDB format | pdb1fsd.ent.gz | 333 KB | Display | PDB format |
PDBx/mmJSON format | 1fsd.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1fsd_validation.pdf.gz | 340.9 KB | Display | wwPDB validaton report |
---|---|---|---|---|
Full document | 1fsd_full_validation.pdf.gz | 591.4 KB | Display | |
Data in XML | 1fsd_validation.xml.gz | 21.5 KB | Display | |
Data in CIF | 1fsd_validation.cif.gz | 34.9 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fs/1fsd ftp://data.pdbj.org/pub/pdb/validation_reports/fs/1fsd | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
| |||||||||
---|---|---|---|---|---|---|---|---|---|---|
1 |
| |||||||||
NMR ensembles |
|
-Components
#1: Protein/peptide | Mass: 3497.037 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) synthetic construct (others) |
---|
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR experiment |
|
-Sample preparation
Sample conditions | pH: 5 / Temperature: 280 K |
---|---|
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Varian UNITYPLUS / Manufacturer: Varian / Model: UNITYPLUS / Field strength: 600 MHz |
---|
-Processing
Software |
| ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NMR software |
| ||||||||||||
Refinement | Method: HYBRID DISTANCE GEOMETRY-SIMULATED ANNEALING / Software ordinal: 1 Details: STANDARD X-PLOR REFINEMENT PROTOCOLS WERE USED WITH A FINAL REPEL RADIUS OF 0.8. | ||||||||||||
NMR ensemble | Conformer selection criteria: NO RESTRAINT VIOLATIONS GREATER THAN 0.3 ANGSTROMS Conformers calculated total number: 100 / Conformers submitted total number: 41 |