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- PDB-1fox: NMR STRUCTURE OF L11-C76, THE C-TERMINAL DOMAIN OF 50S RIBOSOMAL ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1fox | ||||||
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Title | NMR STRUCTURE OF L11-C76, THE C-TERMINAL DOMAIN OF 50S RIBOSOMAL PROTEIN L11, 33 STRUCTURES | ||||||
![]() | L11-C76 | ||||||
![]() | RIBOSOMAL PROTEIN / RNA-BINDING DOMAIN / L11-C76 / ALPHA-HELICAL PROTEIN / HOMEODOMAIN FOLD | ||||||
Function / homology | ![]() large ribosomal subunit rRNA binding / ribosome / structural constituent of ribosome / ribonucleoprotein complex / translation / DNA binding Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | SOLUTION NMR / DGSA | ||||||
![]() | Markus, M.A. / Hinck, A.P. / Huang, S. / Draper, D.E. / Torchia, D.A. | ||||||
![]() | ![]() Title: High resolution solution structure of ribosomal protein L11-C76, a helical protein with a flexible loop that becomes structured upon binding to RNA. Authors: Markus, M.A. / Hinck, A.P. / Huang, S. / Draper, D.E. / Torchia, D.A. #1: ![]() Title: The RNA Binding Domain of Ribosomal Protein L11 is Structurally Similar to Homeodomains Authors: Xing, Y. / Guha Thakurta, D. / Draper, D.E. #2: ![]() Title: Cooperative Interactions of RNA and Thiostrepton Antibiotic with Two Domains of Ribosomal Protein L11 Authors: Xing, Y. / Draper, D.E. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 741.7 KB | Display | ![]() |
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PDB format | ![]() | 624.2 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 345.3 KB | Display | ![]() |
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Full document | ![]() | 607.1 KB | Display | |
Data in XML | ![]() | 58.4 KB | Display | |
Data in CIF | ![]() | 88.7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 8152.554 Da / Num. of mol.: 1 Fragment: CARBOXYL-TERMINAL DOMAIN OF PROTEIN L11, RESIDUES THR 59 TO ASP 133 Mutation: INS(MET1) Source method: isolated from a genetically manipulated source Details: BINDS SPECIFICALLY TO RNA Source: (gene. exp.) ![]() ![]() Cell line: BL21 / Plasmid: DERIVED FROM PET11A / Species (production host): Escherichia coli / Production host: ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: BUFFER: 10 MM K2HPO4, 25 MM KCL, 2MM MGCL2 |
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Sample preparation
Sample conditions | pH: 6.10 / Temperature: 298 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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Processing
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NMR software |
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Refinement | Method: DGSA / Software ordinal: 1 | ||||||||||||
NMR ensemble | Conformer selection criteria: NO NOE VIOLATIONS OVER 0.3 A, NO ANGLE VIOLATIONS OVER 5 DEG Conformers calculated total number: 50 / Conformers submitted total number: 33 |