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- PDB-1fkz: NMR STUDY OF B-DNA CONTAINING A MISMATCHED BASE PAIR IN THE 29-39... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1fkz | ||||||
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Title | NMR STUDY OF B-DNA CONTAINING A MISMATCHED BASE PAIR IN THE 29-39 K-RAS GENE SEQUENCE: CC CT C+C C+T, 2 STRUCTURES | ||||||
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![]() | DNA / DEOXYRIBONUCLEIC ACID / B-DNA / K-RAS | ||||||
Function / homology | DNA / DNA (> 10)![]() | ||||||
Method | SOLUTION NMR | ||||||
![]() | Boulard, Y. / Cognet, J.A.H. / Fazakerley, G.V. | ||||||
![]() | ![]() Title: Solution structure as a function of pH of two central mismatches, C . T and C . C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics. Authors: Boulard, Y. / Cognet, J.A. / Fazakerley, G.V. #1: ![]() Title: Solution Structure of an Oncogenic DNA Duplex, the K-Ras Gene and the Sequence Containing a Central C.A or A.G Mismatch as a Function of Ph: Nuclear Magnetic Resonance and Molecular Dynamics Studies Authors: Boulard, Y. / Cognet, J.A. / Gabarro-Arpa, J. / Le Bret, M. / Carbonnaux, C. / Fazakerley, G.V. #2: ![]() Title: Helical Parameters, Fluctuations, Alternative Hydrogen Bonding, and Bending in Oligonucleotides Containing a Mismatched Base-Pair by Noesy Distance Restrained and Distance Free Molecular Dynamics Authors: Cognet, J.A. / Boulard, Y. / Fazakerley, G.V. #3: ![]() Title: Solution Structure of Two Mismatches A.A and T.T in the K-Ras Gene Context by Nuclear Magnetic Resonance and Molecular Dynamics Authors: Gervais, V. / Cognet, J.A. / Le Bret, M. / Sowers, L.C. / Fazakerley, G.V. | ||||||
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 35.6 KB | Display | ![]() |
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PDB format | ![]() | 25.6 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 240 KB | Display | ![]() |
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Full document | ![]() | 244 KB | Display | |
Data in XML | ![]() | 1.5 KB | Display | |
Data in CIF | ![]() | 1.8 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 3279.151 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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#2: DNA chain | Mass: 3390.209 Da / Num. of mol.: 1 / Source method: obtained synthetically |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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Processing
Software | Name: ![]() |
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NMR software | Name: ![]() Developer: PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON,SEIBEL,CH Classification: refinement |
Refinement | Software ordinal: 1 / Details: MORCAD BY LEBRET ALSO WAS USED. |
NMR ensemble | Conformers submitted total number: 2 |